Hb_152439_020

Information

Type -
Description -
Location Contig152439: 54517-63356
Sequence    

Annotation

kegg
ID pop:POPTR_0001s15900g
description Copper-transporting ATPase RAN1 family protein
nr
ID XP_012084564.1
description PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7J8
description Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1
trembl
ID A0A067JTV8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20239 PE=3 SV=1
Gene Ontology
ID GO:0005768
description copper-transporting atpase ran1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13107: 54487-63144
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152439_020 0.0 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
2 Hb_000193_250 0.1039060376 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
3 Hb_000157_010 0.1046322125 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_183612_100 0.1102232721 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
5 Hb_004306_060 0.1128697726 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
6 Hb_143629_090 0.1157931782 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
7 Hb_002498_060 0.119898662 - - ATP binding protein, putative [Ricinus communis]
8 Hb_001959_160 0.1203793947 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
9 Hb_003943_030 0.1224342539 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
10 Hb_008085_040 0.1226236524 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
11 Hb_004800_160 0.1237018525 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
12 Hb_000576_040 0.1240531578 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
13 Hb_000059_220 0.127413409 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
14 Hb_002739_110 0.1297743217 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
15 Hb_001856_020 0.1308107087 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
16 Hb_000236_140 0.1341485326 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
17 Hb_004410_100 0.1367197357 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
18 Hb_003408_030 0.1381160325 - - PREDICTED: protein YIF1B [Jatropha curcas]
19 Hb_004128_180 0.1392407103 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_000479_130 0.1411087379 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]

Gene co-expression network

sample Hb_152439_020 Hb_152439_020 Hb_000193_250 Hb_000193_250 Hb_152439_020--Hb_000193_250 Hb_000157_010 Hb_000157_010 Hb_152439_020--Hb_000157_010 Hb_183612_100 Hb_183612_100 Hb_152439_020--Hb_183612_100 Hb_004306_060 Hb_004306_060 Hb_152439_020--Hb_004306_060 Hb_143629_090 Hb_143629_090 Hb_152439_020--Hb_143629_090 Hb_002498_060 Hb_002498_060 Hb_152439_020--Hb_002498_060 Hb_000193_250--Hb_004306_060 Hb_001856_020 Hb_001856_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000179_210 Hb_000179_210 Hb_000193_250--Hb_000179_210 Hb_010417_020 Hb_010417_020 Hb_000157_010--Hb_010417_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_011457_170 Hb_011457_170 Hb_000157_010--Hb_011457_170 Hb_003747_030 Hb_003747_030 Hb_183612_100--Hb_003747_030 Hb_008085_040 Hb_008085_040 Hb_183612_100--Hb_008085_040 Hb_000861_040 Hb_000861_040 Hb_183612_100--Hb_000861_040 Hb_004951_040 Hb_004951_040 Hb_183612_100--Hb_004951_040 Hb_004882_020 Hb_004882_020 Hb_183612_100--Hb_004882_020 Hb_000479_130 Hb_000479_130 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_000236_140 Hb_000236_140 Hb_004306_060--Hb_000236_140 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000249_130 Hb_000249_130 Hb_143629_090--Hb_000249_130 Hb_143629_090--Hb_004800_160 Hb_001437_240 Hb_001437_240 Hb_143629_090--Hb_001437_240 Hb_143629_090--Hb_024952_010 Hb_003943_030 Hb_003943_030 Hb_143629_090--Hb_003943_030 Hb_002498_060--Hb_000157_010 Hb_004128_180 Hb_004128_180 Hb_002498_060--Hb_004128_180 Hb_002498_060--Hb_000236_140 Hb_002498_060--Hb_001856_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
133.031 24.2084 7.14873 19.4475 89.3615 79.2888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.3831 136.761 317.848 55.468 17.8804

CAGE analysis