Hb_152453_010

Information

Type -
Description -
Location Contig152453: 1626-4372
Sequence    

Annotation

kegg
ID rcu:RCOM_1680510
description aminomethyltransferase, putative
nr
ID XP_012087099.1
description PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
swissprot
ID Q4P7A4
description Putative transferase CAF17, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CAF17 PE=3 SV=1
trembl
ID A0A067JNX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20753 PE=3 SV=1
Gene Ontology
ID GO:0016740
description transferase caf17 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152453_010 0.0 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
2 Hb_005846_020 0.0627763967 - - PREDICTED: tubulin-folding cofactor C [Jatropha curcas]
3 Hb_000976_080 0.0656247715 - - hypothetical protein VITISV_034376 [Vitis vinifera]
4 Hb_001910_020 0.0889198133 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]
5 Hb_000345_530 0.0908315693 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
6 Hb_000617_220 0.0967340594 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_000392_050 0.0977991083 - - PREDICTED: uncharacterized protein LOC105640540 isoform X2 [Jatropha curcas]
8 Hb_005695_060 0.0979996642 - - PREDICTED: probable tRNA modification GTPase MnmE [Jatropha curcas]
9 Hb_003091_010 0.0987027015 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
10 Hb_035318_010 0.10059761 - - PREDICTED: uncharacterized protein LOC105645250 [Jatropha curcas]
11 Hb_030827_030 0.1025139838 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
12 Hb_002783_120 0.104393578 - - PREDICTED: uncharacterized protein LOC105635329 [Jatropha curcas]
13 Hb_004450_060 0.1090225202 - - PREDICTED: uncharacterized protein LOC105638784 isoform X2 [Jatropha curcas]
14 Hb_000923_040 0.1091245648 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
15 Hb_000104_080 0.109567847 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
16 Hb_005803_010 0.1097315127 - - PREDICTED: probable zinc metallopeptidase EGY3, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_004920_060 0.1098535721 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
18 Hb_003006_060 0.1098768497 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
19 Hb_000480_010 0.1107632695 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001001_020 0.1109184611 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Populus euphratica]

Gene co-expression network

sample Hb_152453_010 Hb_152453_010 Hb_005846_020 Hb_005846_020 Hb_152453_010--Hb_005846_020 Hb_000976_080 Hb_000976_080 Hb_152453_010--Hb_000976_080 Hb_001910_020 Hb_001910_020 Hb_152453_010--Hb_001910_020 Hb_000345_530 Hb_000345_530 Hb_152453_010--Hb_000345_530 Hb_000617_220 Hb_000617_220 Hb_152453_010--Hb_000617_220 Hb_000392_050 Hb_000392_050 Hb_152453_010--Hb_000392_050 Hb_005846_020--Hb_000976_080 Hb_005803_010 Hb_005803_010 Hb_005846_020--Hb_005803_010 Hb_005846_020--Hb_000617_220 Hb_005695_060 Hb_005695_060 Hb_005846_020--Hb_005695_060 Hb_003091_010 Hb_003091_010 Hb_005846_020--Hb_003091_010 Hb_001001_020 Hb_001001_020 Hb_000976_080--Hb_001001_020 Hb_000976_080--Hb_000345_530 Hb_000976_080--Hb_005695_060 Hb_002783_120 Hb_002783_120 Hb_000976_080--Hb_002783_120 Hb_035318_010 Hb_035318_010 Hb_001910_020--Hb_035318_010 Hb_000785_030 Hb_000785_030 Hb_001910_020--Hb_000785_030 Hb_001910_020--Hb_003091_010 Hb_073973_160 Hb_073973_160 Hb_001910_020--Hb_073973_160 Hb_001882_040 Hb_001882_040 Hb_001910_020--Hb_001882_040 Hb_000923_040 Hb_000923_040 Hb_000345_530--Hb_000923_040 Hb_000104_080 Hb_000104_080 Hb_000345_530--Hb_000104_080 Hb_001040_040 Hb_001040_040 Hb_000345_530--Hb_001040_040 Hb_030827_030 Hb_030827_030 Hb_000345_530--Hb_030827_030 Hb_002249_160 Hb_002249_160 Hb_000345_530--Hb_002249_160 Hb_000617_220--Hb_003091_010 Hb_011848_010 Hb_011848_010 Hb_000617_220--Hb_011848_010 Hb_001894_030 Hb_001894_030 Hb_000617_220--Hb_001894_030 Hb_006623_020 Hb_006623_020 Hb_000617_220--Hb_006623_020 Hb_000072_140 Hb_000072_140 Hb_000617_220--Hb_000072_140 Hb_000290_020 Hb_000290_020 Hb_000617_220--Hb_000290_020 Hb_000392_050--Hb_000785_030 Hb_009222_010 Hb_009222_010 Hb_000392_050--Hb_009222_010 Hb_018790_070 Hb_018790_070 Hb_000392_050--Hb_018790_070 Hb_001102_080 Hb_001102_080 Hb_000392_050--Hb_001102_080 Hb_002942_050 Hb_002942_050 Hb_000392_050--Hb_002942_050 Hb_001142_050 Hb_001142_050 Hb_000392_050--Hb_001142_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.05481 0.815083 1.8707 0.857437 3.11183 3.14704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.86739 0.949332 0.664259 0.700397 0.431195

CAGE analysis