Hb_152554_010

Information

Type -
Description -
Location Contig152554: 6277-6808
Sequence    

Annotation

kegg
ID pop:POPTR_0006s03900g
description POPTRDRAFT_831805; nucleolar essential family protein
nr
ID KJB48969.1
description hypothetical protein B456_008G095800, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2SXV8
description Gossypium raimondii chromosome 8, whole genome shotgun sequence (Fragment) OS=Gossypium raimondii GN=B456_008G095800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152554_010 0.0 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
2 Hb_007188_020 0.0902840845 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
3 Hb_006487_060 0.106829017 - - Defective in cullin neddylation protein, putative [Ricinus communis]
4 Hb_000812_040 0.1076304529 - - zinc finger family protein [Populus trichocarpa]
5 Hb_003861_040 0.1110085846 - - hypothetical protein JCGZ_16325 [Jatropha curcas]
6 Hb_001377_180 0.1195016168 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
7 Hb_000176_120 0.1200928618 - - seryl-tRNA synthetase, putative [Ricinus communis]
8 Hb_076875_020 0.1210141047 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_005085_030 0.1245407235 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
10 Hb_005367_010 0.1247253041 - - -
11 Hb_038237_010 0.1253053079 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
12 Hb_136731_010 0.1276589618 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
13 Hb_032927_010 0.1289641657 - - -
14 Hb_002687_080 0.1292017097 - - hypothetical protein JCGZ_06535 [Jatropha curcas]
15 Hb_067776_010 0.1313596425 - - mitochondrial 39S ribosomal protein L53 [Hevea brasiliensis]
16 Hb_007763_060 0.1326075405 - - BnaA02g23510D [Brassica napus]
17 Hb_000825_030 0.1372318023 - - zinc binding dehydrogenase, putative [Ricinus communis]
18 Hb_116596_010 0.1438022589 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
19 Hb_010504_030 0.1438398502 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
20 Hb_000001_040 0.1442754 - - unnamed protein product [Coffea canephora]

Gene co-expression network

sample Hb_152554_010 Hb_152554_010 Hb_007188_020 Hb_007188_020 Hb_152554_010--Hb_007188_020 Hb_006487_060 Hb_006487_060 Hb_152554_010--Hb_006487_060 Hb_000812_040 Hb_000812_040 Hb_152554_010--Hb_000812_040 Hb_003861_040 Hb_003861_040 Hb_152554_010--Hb_003861_040 Hb_001377_180 Hb_001377_180 Hb_152554_010--Hb_001377_180 Hb_000176_120 Hb_000176_120 Hb_152554_010--Hb_000176_120 Hb_116632_010 Hb_116632_010 Hb_007188_020--Hb_116632_010 Hb_032927_010 Hb_032927_010 Hb_007188_020--Hb_032927_010 Hb_000001_040 Hb_000001_040 Hb_007188_020--Hb_000001_040 Hb_007188_020--Hb_000812_040 Hb_005085_030 Hb_005085_030 Hb_007188_020--Hb_005085_030 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_000812_040--Hb_032927_010 Hb_067776_010 Hb_067776_010 Hb_000812_040--Hb_067776_010 Hb_006502_080 Hb_006502_080 Hb_000812_040--Hb_006502_080 Hb_140291_010 Hb_140291_010 Hb_000812_040--Hb_140291_010 Hb_022250_130 Hb_022250_130 Hb_000812_040--Hb_022250_130 Hb_000162_260 Hb_000162_260 Hb_003861_040--Hb_000162_260 Hb_005367_010 Hb_005367_010 Hb_003861_040--Hb_005367_010 Hb_007441_270 Hb_007441_270 Hb_003861_040--Hb_007441_270 Hb_098852_010 Hb_098852_010 Hb_003861_040--Hb_098852_010 Hb_003861_040--Hb_000812_040 Hb_000155_180 Hb_000155_180 Hb_001377_180--Hb_000155_180 Hb_136731_010 Hb_136731_010 Hb_001377_180--Hb_136731_010 Hb_000771_100 Hb_000771_100 Hb_001377_180--Hb_000771_100 Hb_002374_020 Hb_002374_020 Hb_001377_180--Hb_002374_020 Hb_003994_270 Hb_003994_270 Hb_001377_180--Hb_003994_270 Hb_003011_040 Hb_003011_040 Hb_001377_180--Hb_003011_040 Hb_005054_070 Hb_005054_070 Hb_000176_120--Hb_005054_070 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.33511 1.63816 2.62898 12.8516 4.44315 23.6819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1733 8.8242 5.04275 5.54431 1.26621

CAGE analysis