Hb_152587_010

Information

Type -
Description -
Location Contig152587: 183-688
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152587_010 0.0 - - -
2 Hb_001125_030 0.2315917356 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000260_540 0.2360518433 - - hypothetical protein JCGZ_00592 [Jatropha curcas]
4 Hb_059126_010 0.242603071 - - -
5 Hb_000008_050 0.2480013238 - - Phenylalanine ammonia-lyase, putative [Ricinus communis]
6 Hb_005867_010 0.2601057745 - - -
7 Hb_001364_020 0.2605704245 - - -
8 Hb_000038_160 0.2613081287 - - putative gag protein [Coffea canephora]
9 Hb_140049_070 0.2614141816 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002805_320 0.261855663 - - -
11 Hb_002163_060 0.2635666875 - - -
12 Hb_000362_240 0.2661785784 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002124_020 0.2710433947 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
14 Hb_013983_010 0.280666492 - - hypothetical protein PRUPE_ppa016763mg, partial [Prunus persica]
15 Hb_029866_010 0.2816404029 - - -
16 Hb_002983_100 0.2838388166 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF084 [Jatropha curcas]
17 Hb_027393_020 0.286278534 - - -
18 Hb_033225_020 0.2873532946 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000905_070 0.2906372868 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
20 Hb_004324_380 0.2912661763 - - -

Gene co-expression network

sample Hb_152587_010 Hb_152587_010 Hb_001125_030 Hb_001125_030 Hb_152587_010--Hb_001125_030 Hb_000260_540 Hb_000260_540 Hb_152587_010--Hb_000260_540 Hb_059126_010 Hb_059126_010 Hb_152587_010--Hb_059126_010 Hb_000008_050 Hb_000008_050 Hb_152587_010--Hb_000008_050 Hb_005867_010 Hb_005867_010 Hb_152587_010--Hb_005867_010 Hb_001364_020 Hb_001364_020 Hb_152587_010--Hb_001364_020 Hb_001125_030--Hb_059126_010 Hb_029866_010 Hb_029866_010 Hb_001125_030--Hb_029866_010 Hb_013983_010 Hb_013983_010 Hb_001125_030--Hb_013983_010 Hb_033225_020 Hb_033225_020 Hb_001125_030--Hb_033225_020 Hb_000345_480 Hb_000345_480 Hb_001125_030--Hb_000345_480 Hb_000153_040 Hb_000153_040 Hb_001125_030--Hb_000153_040 Hb_006502_100 Hb_006502_100 Hb_000260_540--Hb_006502_100 Hb_004007_060 Hb_004007_060 Hb_000260_540--Hb_004007_060 Hb_007008_020 Hb_007008_020 Hb_000260_540--Hb_007008_020 Hb_000100_050 Hb_000100_050 Hb_000260_540--Hb_000100_050 Hb_011978_010 Hb_011978_010 Hb_000260_540--Hb_011978_010 Hb_059126_010--Hb_033225_020 Hb_059126_010--Hb_029866_010 Hb_059126_010--Hb_013983_010 Hb_059126_010--Hb_000008_050 Hb_002983_100 Hb_002983_100 Hb_059126_010--Hb_002983_100 Hb_000008_050--Hb_001364_020 Hb_000362_240 Hb_000362_240 Hb_000008_050--Hb_000362_240 Hb_000008_050--Hb_005867_010 Hb_000038_160 Hb_000038_160 Hb_000008_050--Hb_000038_160 Hb_140049_070 Hb_140049_070 Hb_000008_050--Hb_140049_070 Hb_005867_010--Hb_001364_020 Hb_005867_010--Hb_000038_160 Hb_005867_010--Hb_140049_070 Hb_002805_320 Hb_002805_320 Hb_005867_010--Hb_002805_320 Hb_002163_060 Hb_002163_060 Hb_005867_010--Hb_002163_060 Hb_027393_020 Hb_027393_020 Hb_005867_010--Hb_027393_020 Hb_001364_020--Hb_000038_160 Hb_001364_020--Hb_140049_070 Hb_001364_020--Hb_002805_320 Hb_001364_020--Hb_002163_060 Hb_001364_020--Hb_027393_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.49962 0 0 0.132366 0.917361 0.0769724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis