Hb_152784_010

Information

Type -
Description -
Location Contig152784: 13100-16534
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa010913mg
description hypothetical protein
nr
ID XP_007227569.1
description hypothetical protein PRUPE_ppa010913mg [Prunus persica]
swissprot
ID Q9ZPR0
description Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Arabidopsis thaliana GN=At2g03690 PE=2 SV=1
trembl
ID M5Y370
description Ubiquinone biosynthesis protein COQ4 homolog, mitochondrial OS=Prunus persica GN=PRUPE_ppa010913mg PE=3 SV=1
Gene Ontology
ID GO:0005743
description ubiquinone biosynthesis protein coq4 mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13115: 13103-16911 , PASA_asmbl_13116: 14732-14915
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152784_010 0.0 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
2 Hb_000638_250 0.0603493151 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_000317_390 0.0614917114 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
4 Hb_001318_250 0.0645776611 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
5 Hb_033594_150 0.0668747491 - - unknown [Lotus japonicus]
6 Hb_000103_320 0.0684944328 - - Stem-specific protein TSJT1, putative [Ricinus communis]
7 Hb_004696_080 0.0713508837 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]
8 Hb_000805_240 0.0730669509 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
9 Hb_000934_250 0.0741110915 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
10 Hb_000331_200 0.074451302 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
11 Hb_148121_040 0.0747208434 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
12 Hb_002007_210 0.0755030533 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
13 Hb_000221_160 0.0816993095 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
14 Hb_001703_060 0.0830963621 - - protein kinase, putative [Ricinus communis]
15 Hb_018124_010 0.0840418854 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
16 Hb_000261_140 0.0846760892 - - -
17 Hb_010042_010 0.0861605779 - - Urease accessory protein ureD, putative [Ricinus communis]
18 Hb_029388_030 0.0862942209 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
19 Hb_004052_050 0.0869521211 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]
20 Hb_006831_120 0.089732943 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_152784_010 Hb_152784_010 Hb_000638_250 Hb_000638_250 Hb_152784_010--Hb_000638_250 Hb_000317_390 Hb_000317_390 Hb_152784_010--Hb_000317_390 Hb_001318_250 Hb_001318_250 Hb_152784_010--Hb_001318_250 Hb_033594_150 Hb_033594_150 Hb_152784_010--Hb_033594_150 Hb_000103_320 Hb_000103_320 Hb_152784_010--Hb_000103_320 Hb_004696_080 Hb_004696_080 Hb_152784_010--Hb_004696_080 Hb_000638_250--Hb_000103_320 Hb_000261_140 Hb_000261_140 Hb_000638_250--Hb_000261_140 Hb_007044_120 Hb_007044_120 Hb_000638_250--Hb_007044_120 Hb_006831_120 Hb_006831_120 Hb_000638_250--Hb_006831_120 Hb_000638_250--Hb_004696_080 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_000934_250 Hb_000934_250 Hb_001318_250--Hb_000934_250 Hb_001124_090 Hb_001124_090 Hb_001318_250--Hb_001124_090 Hb_001318_250--Hb_000103_320 Hb_001016_030 Hb_001016_030 Hb_001318_250--Hb_001016_030 Hb_000221_160 Hb_000221_160 Hb_033594_150--Hb_000221_160 Hb_000985_060 Hb_000985_060 Hb_033594_150--Hb_000985_060 Hb_029388_030 Hb_029388_030 Hb_033594_150--Hb_029388_030 Hb_010042_010 Hb_010042_010 Hb_033594_150--Hb_010042_010 Hb_018124_010 Hb_018124_010 Hb_033594_150--Hb_018124_010 Hb_000103_320--Hb_006831_120 Hb_003581_150 Hb_003581_150 Hb_000103_320--Hb_003581_150 Hb_007441_330 Hb_007441_330 Hb_000103_320--Hb_007441_330 Hb_024439_010 Hb_024439_010 Hb_004696_080--Hb_024439_010 Hb_000805_240 Hb_000805_240 Hb_004696_080--Hb_000805_240 Hb_148121_040 Hb_148121_040 Hb_004696_080--Hb_148121_040 Hb_000291_080 Hb_000291_080 Hb_004696_080--Hb_000291_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.9481 11.4574 20.1123 35.5029 19.0333 20.3286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.2564 44.8311 38.2528 17.4663 13.1269

CAGE analysis