Hb_152910_050

Information

Type transcription factor
Description TF Family: OFP
Location Contig152910: 19568-20233
Sequence    

Annotation

kegg
ID rcu:RCOM_0911970
description hypothetical protein
nr
ID XP_002517130.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4I8R6
description Transcription repressor OFP12 OS=Arabidopsis thaliana GN=OFP12 PE=1 SV=1
trembl
ID B9RTR1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0911970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152910_050 0.0 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
2 Hb_040852_010 0.0241025733 - - conserved hypothetical protein [Ricinus communis]
3 Hb_098315_060 0.0315420953 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 7-like [Jatropha curcas]
4 Hb_003894_110 0.0441810477 - - PREDICTED: 65-kDa microtubule-associated protein 4 [Jatropha curcas]
5 Hb_000134_130 0.047040894 - - PREDICTED: uncharacterized protein LOC105628670 [Jatropha curcas]
6 Hb_017434_010 0.0570846175 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
7 Hb_000103_220 0.0594022239 - - PREDICTED: uncharacterized protein LOC105632036 [Jatropha curcas]
8 Hb_003376_020 0.0597857597 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001021_120 0.0627283136 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
10 Hb_000009_270 0.0673206956 - - Calmodulin, putative [Ricinus communis]
11 Hb_004202_020 0.0684769302 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000483_450 0.0728068883 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
13 Hb_000003_380 0.0809786772 - - conserved hypothetical protein [Ricinus communis]
14 Hb_031321_020 0.0810671466 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
15 Hb_010449_010 0.0858942075 - - l-ascorbate oxidase, putative [Ricinus communis]
16 Hb_000392_110 0.0894392032 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
17 Hb_004137_040 0.0897048068 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
18 Hb_000418_110 0.0946962541 - - PREDICTED: protein kinase PINOID [Jatropha curcas]
19 Hb_000320_010 0.094929615 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001007_020 0.0957547607 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_152910_050 Hb_152910_050 Hb_040852_010 Hb_040852_010 Hb_152910_050--Hb_040852_010 Hb_098315_060 Hb_098315_060 Hb_152910_050--Hb_098315_060 Hb_003894_110 Hb_003894_110 Hb_152910_050--Hb_003894_110 Hb_000134_130 Hb_000134_130 Hb_152910_050--Hb_000134_130 Hb_017434_010 Hb_017434_010 Hb_152910_050--Hb_017434_010 Hb_000103_220 Hb_000103_220 Hb_152910_050--Hb_000103_220 Hb_040852_010--Hb_003894_110 Hb_040852_010--Hb_098315_060 Hb_040852_010--Hb_000134_130 Hb_003376_020 Hb_003376_020 Hb_040852_010--Hb_003376_020 Hb_004202_020 Hb_004202_020 Hb_040852_010--Hb_004202_020 Hb_098315_060--Hb_000134_130 Hb_098315_060--Hb_003894_110 Hb_098315_060--Hb_017434_010 Hb_098315_060--Hb_000103_220 Hb_003894_110--Hb_000134_130 Hb_003894_110--Hb_003376_020 Hb_003894_110--Hb_004202_020 Hb_001021_120 Hb_001021_120 Hb_000134_130--Hb_001021_120 Hb_000134_130--Hb_003376_020 Hb_017434_010--Hb_000103_220 Hb_000009_270 Hb_000009_270 Hb_017434_010--Hb_000009_270 Hb_010449_010 Hb_010449_010 Hb_017434_010--Hb_010449_010 Hb_017434_010--Hb_001021_120 Hb_017383_010 Hb_017383_010 Hb_000103_220--Hb_017383_010 Hb_000103_220--Hb_003376_020 Hb_000103_220--Hb_040852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.146179 1.73535 2.03887 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0278155 0.938256

CAGE analysis