Hb_152980_020

Information

Type -
Description -
Location Contig152980: 1412-2895
Sequence    

Annotation

kegg
ID cmo:103495151
description protein trichome birefringence-like 33
nr
ID XP_012086714.1
description PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
swissprot
ID F4IH21
description Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1
trembl
ID A0A067LJA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13150: 1790-2828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_152980_020 0.0 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
2 Hb_005545_110 0.0844307111 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
3 Hb_144449_010 0.0932251746 - - Potassium transporter, putative [Ricinus communis]
4 Hb_002685_160 0.1114872016 - - leucine-rich repeat protein, putative [Ricinus communis]
5 Hb_001269_400 0.1206349147 - - cinnamoyl-CoA reductase [Hevea brasiliensis]
6 Hb_014361_040 0.1226088362 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
7 Hb_010222_040 0.1254199959 - - PREDICTED: kinesin-2 [Jatropha curcas]
8 Hb_000473_100 0.1257834454 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_002097_080 0.1270828171 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
10 Hb_001318_100 0.1273733863 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
11 Hb_009113_080 0.1333150023 - - PREDICTED: deoxynucleoside triphosphate triphosphohydrolase SAMHD1 homolog [Jatropha curcas]
12 Hb_003894_180 0.1342596153 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
13 Hb_000462_190 0.1358491589 - - PREDICTED: thaumatin-like protein 1 [Jatropha curcas]
14 Hb_000685_020 0.1362783661 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
15 Hb_002284_060 0.1363935028 - - sugar transporter, putative [Ricinus communis]
16 Hb_000152_570 0.1364544771 - - 21 kDa protein precursor, putative [Ricinus communis]
17 Hb_002095_020 0.1372097021 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
18 Hb_003656_090 0.1411932407 - - PREDICTED: protein Brevis radix-like 4 [Jatropha curcas]
19 Hb_002495_030 0.1412138301 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
20 Hb_003266_010 0.1432641736 - - hypothetical protein JCGZ_21945 [Jatropha curcas]

Gene co-expression network

sample Hb_152980_020 Hb_152980_020 Hb_005545_110 Hb_005545_110 Hb_152980_020--Hb_005545_110 Hb_144449_010 Hb_144449_010 Hb_152980_020--Hb_144449_010 Hb_002685_160 Hb_002685_160 Hb_152980_020--Hb_002685_160 Hb_001269_400 Hb_001269_400 Hb_152980_020--Hb_001269_400 Hb_014361_040 Hb_014361_040 Hb_152980_020--Hb_014361_040 Hb_010222_040 Hb_010222_040 Hb_152980_020--Hb_010222_040 Hb_003633_170 Hb_003633_170 Hb_005545_110--Hb_003633_170 Hb_002750_040 Hb_002750_040 Hb_005545_110--Hb_002750_040 Hb_031224_010 Hb_031224_010 Hb_005545_110--Hb_031224_010 Hb_001404_070 Hb_001404_070 Hb_005545_110--Hb_001404_070 Hb_001728_130 Hb_001728_130 Hb_005545_110--Hb_001728_130 Hb_000473_100 Hb_000473_100 Hb_144449_010--Hb_000473_100 Hb_003266_010 Hb_003266_010 Hb_144449_010--Hb_003266_010 Hb_010557_020 Hb_010557_020 Hb_144449_010--Hb_010557_020 Hb_004607_160 Hb_004607_160 Hb_144449_010--Hb_004607_160 Hb_000856_200 Hb_000856_200 Hb_144449_010--Hb_000856_200 Hb_000685_020 Hb_000685_020 Hb_002685_160--Hb_000685_020 Hb_000230_360 Hb_000230_360 Hb_002685_160--Hb_000230_360 Hb_003656_090 Hb_003656_090 Hb_002685_160--Hb_003656_090 Hb_005724_040 Hb_005724_040 Hb_002685_160--Hb_005724_040 Hb_002097_080 Hb_002097_080 Hb_002685_160--Hb_002097_080 Hb_149055_010 Hb_149055_010 Hb_001269_400--Hb_149055_010 Hb_002151_020 Hb_002151_020 Hb_001269_400--Hb_002151_020 Hb_002902_040 Hb_002902_040 Hb_001269_400--Hb_002902_040 Hb_001269_400--Hb_000473_100 Hb_007237_080 Hb_007237_080 Hb_001269_400--Hb_007237_080 Hb_000342_020 Hb_000342_020 Hb_001269_400--Hb_000342_020 Hb_000162_070 Hb_000162_070 Hb_014361_040--Hb_000162_070 Hb_026144_040 Hb_026144_040 Hb_014361_040--Hb_026144_040 Hb_014361_040--Hb_007237_080 Hb_014361_040--Hb_002097_080 Hb_000045_080 Hb_000045_080 Hb_014361_040--Hb_000045_080 Hb_014361_040--Hb_001728_130 Hb_010222_040--Hb_000856_200 Hb_010222_040--Hb_010557_020 Hb_000290_030 Hb_000290_030 Hb_010222_040--Hb_000290_030 Hb_010222_040--Hb_144449_010 Hb_001318_100 Hb_001318_100 Hb_010222_040--Hb_001318_100 Hb_000333_030 Hb_000333_030 Hb_010222_040--Hb_000333_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69367 9.87381 12.863 35.2121 0.277617 0.571078
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0435213 0.034233 0.317424 12.9738 23.371

CAGE analysis