Hb_153112_030

Information

Type -
Description -
Location Contig153112: 25985-29088
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18310g
description POPTRDRAFT_833727; hypothetical protein
nr
ID XP_012084312.1
description PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
swissprot
ID O64527
description UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1
trembl
ID A0A067K7H4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19711 PE=4 SV=1
Gene Ontology
ID GO:0005829
description upf0678 fatty acid-binding protein at1g79260

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13165: 26149-29006
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153112_030 0.0 - - PREDICTED: UPF0678 fatty acid-binding protein-like protein At1g79260 [Jatropha curcas]
2 Hb_017948_010 0.0593894607 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
3 Hb_000680_140 0.063468232 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
4 Hb_001633_030 0.0782885368 - - -
5 Hb_000173_220 0.0811479472 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
6 Hb_004459_040 0.0818310557 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
7 Hb_000181_300 0.0818485845 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
8 Hb_001085_120 0.081997447 - - PREDICTED: UV radiation resistance-associated gene protein isoform X1 [Jatropha curcas]
9 Hb_001616_030 0.0875152576 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
10 Hb_000111_330 0.0901873416 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
11 Hb_001780_040 0.0908585085 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
12 Hb_001047_230 0.090991801 - - WD-repeat protein, putative [Ricinus communis]
13 Hb_001083_020 0.0922080137 - - -
14 Hb_003656_070 0.0924746958 - - hypothetical protein CICLE_v10009411mg [Citrus clementina]
15 Hb_002027_210 0.0928914695 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
16 Hb_000230_510 0.0930377931 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
17 Hb_012675_060 0.0930493233 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]
18 Hb_000240_090 0.0931539055 - - Rab5 [Hevea brasiliensis]
19 Hb_003994_040 0.0939308248 - - -
20 Hb_012753_160 0.0940257031 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_153112_030 Hb_153112_030 Hb_017948_010 Hb_017948_010 Hb_153112_030--Hb_017948_010 Hb_000680_140 Hb_000680_140 Hb_153112_030--Hb_000680_140 Hb_001633_030 Hb_001633_030 Hb_153112_030--Hb_001633_030 Hb_000173_220 Hb_000173_220 Hb_153112_030--Hb_000173_220 Hb_004459_040 Hb_004459_040 Hb_153112_030--Hb_004459_040 Hb_000181_300 Hb_000181_300 Hb_153112_030--Hb_000181_300 Hb_017948_010--Hb_000173_220 Hb_003994_040 Hb_003994_040 Hb_017948_010--Hb_003994_040 Hb_001279_360 Hb_001279_360 Hb_017948_010--Hb_001279_360 Hb_001083_020 Hb_001083_020 Hb_017948_010--Hb_001083_020 Hb_003053_030 Hb_003053_030 Hb_017948_010--Hb_003053_030 Hb_000680_140--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_000680_140--Hb_007576_170 Hb_006541_010 Hb_006541_010 Hb_000680_140--Hb_006541_010 Hb_001616_040 Hb_001616_040 Hb_000680_140--Hb_001616_040 Hb_000668_040 Hb_000668_040 Hb_000680_140--Hb_000668_040 Hb_007304_070 Hb_007304_070 Hb_001633_030--Hb_007304_070 Hb_001633_030--Hb_000181_300 Hb_002431_050 Hb_002431_050 Hb_001633_030--Hb_002431_050 Hb_010672_060 Hb_010672_060 Hb_001633_030--Hb_010672_060 Hb_001633_030--Hb_004459_040 Hb_002027_210 Hb_002027_210 Hb_000173_220--Hb_002027_210 Hb_001191_090 Hb_001191_090 Hb_000173_220--Hb_001191_090 Hb_003455_040 Hb_003455_040 Hb_000173_220--Hb_003455_040 Hb_000574_480 Hb_000574_480 Hb_000173_220--Hb_000574_480 Hb_012675_060 Hb_012675_060 Hb_000173_220--Hb_012675_060 Hb_033153_060 Hb_033153_060 Hb_004459_040--Hb_033153_060 Hb_004459_040--Hb_007576_170 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_000193_120 Hb_000193_120 Hb_000181_300--Hb_000193_120 Hb_000012_100 Hb_000012_100 Hb_000181_300--Hb_000012_100 Hb_000181_300--Hb_003053_030 Hb_000181_300--Hb_001191_090 Hb_002374_390 Hb_002374_390 Hb_000181_300--Hb_002374_390 Hb_000103_010 Hb_000103_010 Hb_000181_300--Hb_000103_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.4817 12.3657 15.4885 17.0511 14.4709 20.3572
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.9971 76.2818 46.0012 18.6441 22.4901

CAGE analysis