Hb_153142_010

Information

Type -
Description -
Location Contig153142: 1532-2305
Sequence    

Annotation

kegg
ID egr:104420318
description uncharacterized LOC104420318
nr
ID XP_012075355.1
description PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MRU6
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_26972 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153142_010 0.0 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
2 Hb_188319_010 0.036017434 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
3 Hb_114010_020 0.0731032833 - - -
4 Hb_000402_140 0.1776703126 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_004195_260 0.1899332453 desease resistance Gene Name: NB-ARC Disease resistance protein RPH8A, putative [Ricinus communis]
6 Hb_006674_020 0.2282495232 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_005140_010 0.2468328561 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
8 Hb_062741_010 0.266220101 - - -
9 Hb_001160_010 0.2814686524 - - -
10 Hb_161017_020 0.2892357587 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
11 Hb_042795_010 0.2920452477 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_117252_010 0.2920593716 - - hypothetical protein [Pseudomonas tolaasii]
13 Hb_053575_010 0.2923174085 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_003401_040 0.2925273501 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
15 Hb_011114_050 0.2927861475 - - -
16 Hb_013874_010 0.2929803844 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
17 Hb_017279_030 0.2932549195 - - -
18 Hb_028105_020 0.2944359754 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
19 Hb_165958_010 0.294519251 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_003245_010 0.2945605989 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_153142_010 Hb_153142_010 Hb_188319_010 Hb_188319_010 Hb_153142_010--Hb_188319_010 Hb_114010_020 Hb_114010_020 Hb_153142_010--Hb_114010_020 Hb_000402_140 Hb_000402_140 Hb_153142_010--Hb_000402_140 Hb_004195_260 Hb_004195_260 Hb_153142_010--Hb_004195_260 Hb_006674_020 Hb_006674_020 Hb_153142_010--Hb_006674_020 Hb_005140_010 Hb_005140_010 Hb_153142_010--Hb_005140_010 Hb_188319_010--Hb_114010_020 Hb_188319_010--Hb_000402_140 Hb_188319_010--Hb_004195_260 Hb_188319_010--Hb_006674_020 Hb_188319_010--Hb_005140_010 Hb_114010_020--Hb_000402_140 Hb_114010_020--Hb_004195_260 Hb_114010_020--Hb_005140_010 Hb_114010_020--Hb_006674_020 Hb_161017_020 Hb_161017_020 Hb_000402_140--Hb_161017_020 Hb_006778_010 Hb_006778_010 Hb_000402_140--Hb_006778_010 Hb_012330_030 Hb_012330_030 Hb_000402_140--Hb_012330_030 Hb_062741_010 Hb_062741_010 Hb_004195_260--Hb_062741_010 Hb_005451_020 Hb_005451_020 Hb_004195_260--Hb_005451_020 Hb_004195_260--Hb_006674_020 Hb_001031_050 Hb_001031_050 Hb_006674_020--Hb_001031_050 Hb_153665_010 Hb_153665_010 Hb_006674_020--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_006674_020--Hb_000599_070 Hb_005140_010--Hb_000402_140 Hb_068031_010 Hb_068031_010 Hb_005140_010--Hb_068031_010 Hb_005140_010--Hb_004195_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0337368 0.047728
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.128821

CAGE analysis