Hb_153150_010

Information

Type -
Description -
Location Contig153150: 787-4013
Sequence    

Annotation

kegg
ID egr:104425519
description serine/threonine-protein phosphatase PP2A-3 catalytic subunit
nr
ID XP_010036522.1
description PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
swissprot
ID P48578
description Serine/threonine-protein phosphatase PP2A-3 catalytic subunit OS=Arabidopsis thaliana GN=PP2A3 PE=2 SV=1
trembl
ID A0A059A451
description Serine/threonine-protein phosphatase OS=Eucalyptus grandis GN=EUGRSUZ_K01869 PE=3 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein phosphatase pp2a-3 catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13166: 947-2118
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153150_010 0.0 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
2 Hb_005333_020 0.0719874534 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
3 Hb_005147_110 0.0935094099 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
4 Hb_005314_010 0.1010902616 - - nucleotide binding protein, putative [Ricinus communis]
5 Hb_008725_250 0.1015606456 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_000029_160 0.103742916 - - Nitrilase, putative [Ricinus communis]
7 Hb_000465_310 0.1093874852 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000172_550 0.1096779813 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA1-like [Jatropha curcas]
9 Hb_001975_070 0.1104709322 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]
10 Hb_005914_230 0.1112604759 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
11 Hb_000640_210 0.1123288494 - - hypothetical protein JCGZ_14045 [Jatropha curcas]
12 Hb_000174_200 0.1123966885 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
13 Hb_001195_100 0.1146652929 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
14 Hb_002400_390 0.1155831492 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
15 Hb_000076_290 0.1162478618 - - translation factor sui1, putative [Ricinus communis]
16 Hb_000798_060 0.1165825379 transcription factor TF Family: PHD -
17 Hb_015401_020 0.1176292643 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_001009_050 0.1183808399 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
19 Hb_001348_140 0.1185182603 - - conserved hypothetical protein [Ricinus communis]
20 Hb_024399_010 0.1203401734 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]

Gene co-expression network

sample Hb_153150_010 Hb_153150_010 Hb_005333_020 Hb_005333_020 Hb_153150_010--Hb_005333_020 Hb_005147_110 Hb_005147_110 Hb_153150_010--Hb_005147_110 Hb_005314_010 Hb_005314_010 Hb_153150_010--Hb_005314_010 Hb_008725_250 Hb_008725_250 Hb_153150_010--Hb_008725_250 Hb_000029_160 Hb_000029_160 Hb_153150_010--Hb_000029_160 Hb_000465_310 Hb_000465_310 Hb_153150_010--Hb_000465_310 Hb_005333_020--Hb_000465_310 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_005147_110--Hb_008725_250 Hb_004310_060 Hb_004310_060 Hb_005147_110--Hb_004310_060 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005914_230 Hb_005914_230 Hb_005147_110--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_000001_180 Hb_000001_180 Hb_005314_010--Hb_000001_180 Hb_002818_040 Hb_002818_040 Hb_005314_010--Hb_002818_040 Hb_000413_130 Hb_000413_130 Hb_005314_010--Hb_000413_130 Hb_024399_010 Hb_024399_010 Hb_005314_010--Hb_024399_010 Hb_005314_010--Hb_005914_230 Hb_029281_010 Hb_029281_010 Hb_005314_010--Hb_029281_010 Hb_008725_250--Hb_004310_060 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_002960_060 Hb_002960_060 Hb_000029_160--Hb_002960_060 Hb_000172_550 Hb_000172_550 Hb_000029_160--Hb_000172_550 Hb_000029_160--Hb_001975_070 Hb_027405_020 Hb_027405_020 Hb_000029_160--Hb_027405_020 Hb_002078_420 Hb_002078_420 Hb_000029_160--Hb_002078_420 Hb_000310_080 Hb_000310_080 Hb_000029_160--Hb_000310_080 Hb_006588_090 Hb_006588_090 Hb_000465_310--Hb_006588_090 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_003878_140 Hb_003878_140 Hb_000465_310--Hb_003878_140 Hb_002977_010 Hb_002977_010 Hb_000465_310--Hb_002977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
468.249 252.622 41.4041 43.5252 423.36 297.558
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
308.937 131.06 140.835 67.7639 23.0087

CAGE analysis