Hb_153257_010

Information

Type -
Description -
Location Contig153257: 17174-23122
Sequence    

Annotation

kegg
ID rcu:RCOM_1086230
description Hippocampus abundant transcript 1 protein, putative
nr
ID XP_012074634.1
description PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
swissprot
ID Q8CIA9
description Hippocampus abundant transcript-like protein 1 OS=Mus musculus GN=Hiatl1 PE=2 SV=3
trembl
ID B9SG69
description Hippocampus abundant transcript 1 protein, putative OS=Ricinus communis GN=RCOM_1086230 PE=4 SV=1
Gene Ontology
ID GO:0016021
description hippocampus abundant transcript-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13171: 17321-17733 , PASA_asmbl_13173: 18773-19177 , PASA_asmbl_13174: 20643-22756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153257_010 0.0 - - PREDICTED: hippocampus abundant transcript-like protein 1 [Jatropha curcas]
2 Hb_000139_510 0.107614761 - - PREDICTED: probable E3 ubiquitin-protein ligase LUL4 isoform X1 [Jatropha curcas]
3 Hb_002093_050 0.1196640547 - - hypothetical protein POPTR_0008s02940g [Populus trichocarpa]
4 Hb_000823_010 0.1215989038 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
5 Hb_005485_070 0.1240290427 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
6 Hb_004096_220 0.1276312987 - - PREDICTED: uncharacterized protein LOC105638706 isoform X1 [Jatropha curcas]
7 Hb_000261_310 0.1287194606 - - PREDICTED: UV radiation resistance-associated gene protein isoform X3 [Jatropha curcas]
8 Hb_000085_380 0.1389964735 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012033_010 0.1405099462 - - PREDICTED: histone H1.2-like [Jatropha curcas]
10 Hb_000590_070 0.1416242546 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]
11 Hb_000574_370 0.1421736984 - - PREDICTED: formamidopyrimidine-DNA glycosylase isoform X1 [Jatropha curcas]
12 Hb_002316_170 0.1438704546 - - purine permease, putative [Ricinus communis]
13 Hb_000803_120 0.1439176772 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
14 Hb_000417_280 0.1440004802 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002833_020 0.1468490406 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_003092_050 0.1480078154 - - PREDICTED: putative chloride channel-like protein CLC-g [Jatropha curcas]
17 Hb_000019_170 0.1480136976 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
18 Hb_000116_240 0.148142396 transcription factor TF Family: HB homeobox-leucine zipper family protein [Populus trichocarpa]
19 Hb_000438_010 0.1490504847 - - -
20 Hb_005181_060 0.1492903137 - - ATP-citrate synthase, putative [Ricinus communis]

Gene co-expression network

sample Hb_153257_010 Hb_153257_010 Hb_000139_510 Hb_000139_510 Hb_153257_010--Hb_000139_510 Hb_002093_050 Hb_002093_050 Hb_153257_010--Hb_002093_050 Hb_000823_010 Hb_000823_010 Hb_153257_010--Hb_000823_010 Hb_005485_070 Hb_005485_070 Hb_153257_010--Hb_005485_070 Hb_004096_220 Hb_004096_220 Hb_153257_010--Hb_004096_220 Hb_000261_310 Hb_000261_310 Hb_153257_010--Hb_000261_310 Hb_002833_020 Hb_002833_020 Hb_000139_510--Hb_002833_020 Hb_000574_370 Hb_000574_370 Hb_000139_510--Hb_000574_370 Hb_004864_020 Hb_004864_020 Hb_000139_510--Hb_004864_020 Hb_003092_050 Hb_003092_050 Hb_000139_510--Hb_003092_050 Hb_000085_380 Hb_000085_380 Hb_000139_510--Hb_000085_380 Hb_004746_010 Hb_004746_010 Hb_002093_050--Hb_004746_010 Hb_000406_090 Hb_000406_090 Hb_002093_050--Hb_000406_090 Hb_098315_090 Hb_098315_090 Hb_002093_050--Hb_098315_090 Hb_002093_050--Hb_000823_010 Hb_000803_120 Hb_000803_120 Hb_002093_050--Hb_000803_120 Hb_000019_170 Hb_000019_170 Hb_000823_010--Hb_000019_170 Hb_000157_070 Hb_000157_070 Hb_000823_010--Hb_000157_070 Hb_001322_180 Hb_001322_180 Hb_000823_010--Hb_001322_180 Hb_003058_200 Hb_003058_200 Hb_000823_010--Hb_003058_200 Hb_000834_230 Hb_000834_230 Hb_000823_010--Hb_000834_230 Hb_000116_240 Hb_000116_240 Hb_005485_070--Hb_000116_240 Hb_000318_170 Hb_000318_170 Hb_005485_070--Hb_000318_170 Hb_008695_150 Hb_008695_150 Hb_005485_070--Hb_008695_150 Hb_000590_070 Hb_000590_070 Hb_005485_070--Hb_000590_070 Hb_001277_400 Hb_001277_400 Hb_005485_070--Hb_001277_400 Hb_003106_110 Hb_003106_110 Hb_005485_070--Hb_003106_110 Hb_012033_010 Hb_012033_010 Hb_004096_220--Hb_012033_010 Hb_001307_200 Hb_001307_200 Hb_004096_220--Hb_001307_200 Hb_004096_220--Hb_000261_310 Hb_083078_010 Hb_083078_010 Hb_004096_220--Hb_083078_010 Hb_000438_010 Hb_000438_010 Hb_004096_220--Hb_000438_010 Hb_001268_300 Hb_001268_300 Hb_004096_220--Hb_001268_300 Hb_000256_160 Hb_000256_160 Hb_000261_310--Hb_000256_160 Hb_000309_030 Hb_000309_030 Hb_000261_310--Hb_000309_030 Hb_000094_150 Hb_000094_150 Hb_000261_310--Hb_000094_150 Hb_000261_310--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000261_310--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.222757 2.09772 2.59544 2.98016 0.817608 0.613221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.165314 0.11149 0.105591 4.58525 2.43173

CAGE analysis