Hb_153258_010

Information

Type -
Description -
Location Contig153258: 4389-12229
Sequence    

Annotation

kegg
ID rcu:RCOM_0853160
description hypothetical protein
nr
ID XP_012082526.1
description PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RUI3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0853160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13177: 10548-12067
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153258_010 0.0 - - PREDICTED: uncharacterized protein LOC105642325 [Jatropha curcas]
2 Hb_000041_150 0.0763809387 - - Stachyose synthase precursor, putative [Ricinus communis]
3 Hb_007558_140 0.0784111156 - - PREDICTED: phospholipid-transporting ATPase 1-like [Jatropha curcas]
4 Hb_000120_050 0.0788466065 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
5 Hb_000997_210 0.0900673164 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
6 Hb_003297_030 0.0932382408 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
7 Hb_002027_130 0.0965046601 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
8 Hb_019654_100 0.0996119184 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
9 Hb_098993_010 0.1000351327 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
10 Hb_001221_170 0.1046420292 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50390, chloroplastic [Jatropha curcas]
11 Hb_007943_080 0.1068519193 - - PREDICTED: cyclin-dependent kinase F-1 isoform X1 [Jatropha curcas]
12 Hb_002477_160 0.1083486773 - - hypothetical protein L484_013453 [Morus notabilis]
13 Hb_001635_100 0.1104570637 - - PREDICTED: dentin sialophosphoprotein isoform X5 [Populus euphratica]
14 Hb_011918_080 0.1142364321 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
15 Hb_010863_080 0.11431505 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
16 Hb_000436_070 0.1144725279 - - PREDICTED: V-type proton ATPase subunit B 2 [Jatropha curcas]
17 Hb_000619_080 0.1164870942 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
18 Hb_002307_100 0.1169765634 - - PREDICTED: protein transport protein sec23-1 [Jatropha curcas]
19 Hb_002874_070 0.117363145 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
20 Hb_013405_050 0.1189255689 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]

Gene co-expression network

sample Hb_153258_010 Hb_153258_010 Hb_000041_150 Hb_000041_150 Hb_153258_010--Hb_000041_150 Hb_007558_140 Hb_007558_140 Hb_153258_010--Hb_007558_140 Hb_000120_050 Hb_000120_050 Hb_153258_010--Hb_000120_050 Hb_000997_210 Hb_000997_210 Hb_153258_010--Hb_000997_210 Hb_003297_030 Hb_003297_030 Hb_153258_010--Hb_003297_030 Hb_002027_130 Hb_002027_130 Hb_153258_010--Hb_002027_130 Hb_127003_010 Hb_127003_010 Hb_000041_150--Hb_127003_010 Hb_000041_150--Hb_000997_210 Hb_000187_090 Hb_000187_090 Hb_000041_150--Hb_000187_090 Hb_001221_170 Hb_001221_170 Hb_000041_150--Hb_001221_170 Hb_000041_150--Hb_000120_050 Hb_011918_080 Hb_011918_080 Hb_007558_140--Hb_011918_080 Hb_002477_160 Hb_002477_160 Hb_007558_140--Hb_002477_160 Hb_002307_100 Hb_002307_100 Hb_007558_140--Hb_002307_100 Hb_001085_170 Hb_001085_170 Hb_007558_140--Hb_001085_170 Hb_007558_140--Hb_000997_210 Hb_007943_080 Hb_007943_080 Hb_000120_050--Hb_007943_080 Hb_000120_050--Hb_007558_140 Hb_000358_080 Hb_000358_080 Hb_000120_050--Hb_000358_080 Hb_010863_080 Hb_010863_080 Hb_000120_050--Hb_010863_080 Hb_000120_050--Hb_003297_030 Hb_098993_010 Hb_098993_010 Hb_000997_210--Hb_098993_010 Hb_000997_210--Hb_002027_130 Hb_073171_110 Hb_073171_110 Hb_000997_210--Hb_073171_110 Hb_002299_060 Hb_002299_060 Hb_000997_210--Hb_002299_060 Hb_003297_030--Hb_010863_080 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_003297_030--Hb_098993_010 Hb_000179_210 Hb_000179_210 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_000436_070 Hb_000436_070 Hb_002027_130--Hb_000436_070 Hb_007908_020 Hb_007908_020 Hb_002027_130--Hb_007908_020 Hb_000025_200 Hb_000025_200 Hb_002027_130--Hb_000025_200 Hb_000001_020 Hb_000001_020 Hb_002027_130--Hb_000001_020 Hb_002027_130--Hb_003609_040 Hb_000120_950 Hb_000120_950 Hb_002027_130--Hb_000120_950
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.4963 2.55716 1.73839 1.85532 8.79685 5.38955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.00814 3.1384 10.264 1.72643 1.44256

CAGE analysis