Hb_153365_010

Information

Type -
Description -
Location Contig153365: 132-542
Sequence    

Annotation

kegg
ID sly:104648304
description uncharacterized LOC104648304
nr
ID XP_009788963.1
description PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153365_010 0.0 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
2 Hb_005714_110 0.0199896193 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
3 Hb_043674_060 0.06597131 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
4 Hb_052983_010 0.2553172354 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000197_300 0.2700897165 - - dehydrin protein [Manihot esculenta]
6 Hb_002357_050 0.290391999 - - -
7 Hb_001930_020 0.2912440898 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
8 Hb_005357_090 0.2916280294 - - ubiquitin, putative [Ricinus communis]
9 Hb_005078_030 0.2933355299 - - -
10 Hb_004757_030 0.2935411849 - - -
11 Hb_124518_010 0.2954076271 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
12 Hb_000735_150 0.3046368256 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
13 Hb_001318_090 0.3133995412 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
14 Hb_012725_080 0.3139140627 - - -
15 Hb_000160_030 0.3139422039 - - putative S-adenosylmethionine-dependent methyltransferase [Morus notabilis]
16 Hb_000392_390 0.320627814 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_005396_160 0.3243073882 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
18 Hb_003540_130 0.3292099921 - - -
19 Hb_006061_010 0.3339868561 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
20 Hb_138652_010 0.3417781316 - - hypothetical protein JCGZ_13474 [Jatropha curcas]

Gene co-expression network

sample Hb_153365_010 Hb_153365_010 Hb_005714_110 Hb_005714_110 Hb_153365_010--Hb_005714_110 Hb_043674_060 Hb_043674_060 Hb_153365_010--Hb_043674_060 Hb_052983_010 Hb_052983_010 Hb_153365_010--Hb_052983_010 Hb_000197_300 Hb_000197_300 Hb_153365_010--Hb_000197_300 Hb_002357_050 Hb_002357_050 Hb_153365_010--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_153365_010--Hb_001930_020 Hb_005714_110--Hb_043674_060 Hb_005714_110--Hb_052983_010 Hb_005714_110--Hb_000197_300 Hb_005714_110--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_005714_110--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_043674_060--Hb_124518_010 Hb_043674_060--Hb_005357_090 Hb_043674_060--Hb_001930_020 Hb_000735_150 Hb_000735_150 Hb_043674_060--Hb_000735_150 Hb_005396_160 Hb_005396_160 Hb_052983_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_052983_010--Hb_012725_080 Hb_001318_090 Hb_001318_090 Hb_052983_010--Hb_001318_090 Hb_004757_030 Hb_004757_030 Hb_052983_010--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_052983_010--Hb_005078_030 Hb_042211_010 Hb_042211_010 Hb_052983_010--Hb_042211_010 Hb_000982_140 Hb_000982_140 Hb_000197_300--Hb_000982_140 Hb_000197_300--Hb_043674_060 Hb_004108_030 Hb_004108_030 Hb_000197_300--Hb_004108_030 Hb_000197_300--Hb_052983_010 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005078_030 Hb_002357_050--Hb_004757_030 Hb_002357_050--Hb_005357_090 Hb_002357_050--Hb_124518_010 Hb_002357_050--Hb_000735_150 Hb_001930_020--Hb_005357_090 Hb_001930_020--Hb_124518_010 Hb_001930_020--Hb_005078_030 Hb_001930_020--Hb_004757_030 Hb_001930_020--Hb_000735_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.159937 0 0 0 0.0753981 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.239897 0 0

CAGE analysis