Hb_153395_010

Information

Type -
Description -
Location Contig153395: 43-852
Sequence    

Annotation

kegg
ID cit:102627129
description TMV resistance protein N-like
nr
ID XP_012086191.1
description PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067JQ32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153395_010 0.0 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
2 Hb_003626_080 0.2608123124 - - conserved hypothetical protein [Ricinus communis]
3 Hb_052548_010 0.2683987904 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
4 Hb_012098_050 0.2734937636 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 isoform X1 [Nicotiana tomentosiformis]
5 Hb_003038_150 0.2800546704 - - -
6 Hb_002863_080 0.3007810866 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
7 Hb_113673_010 0.3027264304 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
8 Hb_002016_180 0.3079369375 - - beta-glucosidase, putative [Ricinus communis]
9 Hb_001266_120 0.3144538788 - - auxilin, putative [Ricinus communis]
10 Hb_001477_040 0.321652643 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_046998_010 0.3218076447 desease resistance Gene Name: LRR_4 Disease resistance protein RPM1, putative [Ricinus communis]
12 Hb_000703_300 0.3309849702 - - -
13 Hb_002320_090 0.3313010816 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
14 Hb_000417_020 0.3322095043 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
15 Hb_003175_110 0.3332639385 - - -
16 Hb_175841_010 0.3347953542 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
17 Hb_000996_160 0.3365660097 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000434_010 0.3394289913 - - PREDICTED: protein starmaker [Jatropha curcas]
19 Hb_034812_010 0.3413414471 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
20 Hb_085187_010 0.3420068935 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_153395_010 Hb_153395_010 Hb_003626_080 Hb_003626_080 Hb_153395_010--Hb_003626_080 Hb_052548_010 Hb_052548_010 Hb_153395_010--Hb_052548_010 Hb_012098_050 Hb_012098_050 Hb_153395_010--Hb_012098_050 Hb_003038_150 Hb_003038_150 Hb_153395_010--Hb_003038_150 Hb_002863_080 Hb_002863_080 Hb_153395_010--Hb_002863_080 Hb_113673_010 Hb_113673_010 Hb_153395_010--Hb_113673_010 Hb_003626_080--Hb_052548_010 Hb_003626_080--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_003626_080--Hb_000703_300 Hb_006629_020 Hb_006629_020 Hb_003626_080--Hb_006629_020 Hb_010174_210 Hb_010174_210 Hb_003626_080--Hb_010174_210 Hb_002960_040 Hb_002960_040 Hb_052548_010--Hb_002960_040 Hb_065525_070 Hb_065525_070 Hb_052548_010--Hb_065525_070 Hb_002783_070 Hb_002783_070 Hb_052548_010--Hb_002783_070 Hb_000976_130 Hb_000976_130 Hb_052548_010--Hb_000976_130 Hb_002030_050 Hb_002030_050 Hb_052548_010--Hb_002030_050 Hb_003327_020 Hb_003327_020 Hb_052548_010--Hb_003327_020 Hb_004770_040 Hb_004770_040 Hb_012098_050--Hb_004770_040 Hb_011639_040 Hb_011639_040 Hb_012098_050--Hb_011639_040 Hb_012098_050--Hb_002863_080 Hb_033555_010 Hb_033555_010 Hb_012098_050--Hb_033555_010 Hb_004254_110 Hb_004254_110 Hb_012098_050--Hb_004254_110 Hb_003038_150--Hb_000703_300 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_003038_150--Hb_023675_030 Hb_002249_210 Hb_002249_210 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_008123_010 Hb_008123_010 Hb_003038_150--Hb_008123_010 Hb_006736_010 Hb_006736_010 Hb_002863_080--Hb_006736_010 Hb_000137_060 Hb_000137_060 Hb_002863_080--Hb_000137_060 Hb_000054_110 Hb_000054_110 Hb_002863_080--Hb_000054_110 Hb_046998_010 Hb_046998_010 Hb_002863_080--Hb_046998_010 Hb_003097_050 Hb_003097_050 Hb_002863_080--Hb_003097_050 Hb_007382_070 Hb_007382_070 Hb_002863_080--Hb_007382_070 Hb_003175_110 Hb_003175_110 Hb_113673_010--Hb_003175_110 Hb_113673_010--Hb_003327_020 Hb_000094_040 Hb_000094_040 Hb_113673_010--Hb_000094_040 Hb_000078_090 Hb_000078_090 Hb_113673_010--Hb_000078_090 Hb_010521_030 Hb_010521_030 Hb_113673_010--Hb_010521_030 Hb_078106_010 Hb_078106_010 Hb_113673_010--Hb_078106_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0577214 0.10169 0.132934 0.106587 0.4621 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.31679 0.524564

CAGE analysis