Hb_153470_010

Information

Type -
Description -
Location Contig153470: 106-375
Sequence    

Annotation

kegg
ID bvg:104899108
description uncharacterized LOC104899108
nr
ID XP_010527653.1
description PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153470_010 0.0 - - PREDICTED: uncharacterized protein LOC104804963 [Tarenaya hassleriana]
2 Hb_002374_500 0.1133512335 - - PREDICTED: putative F-box protein PP2-B12 [Gossypium raimondii]
3 Hb_006355_030 0.2240872917 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
4 Hb_041362_010 0.2464181162 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
5 Hb_003141_020 0.2638681949 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
6 Hb_024898_020 0.2799694575 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_007520_040 0.2869077207 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
8 Hb_003095_090 0.2892766508 - - hypothetical protein JCGZ_10029 [Jatropha curcas]
9 Hb_000496_090 0.2894516751 - - PREDICTED: inhibitor of trypsin and hageman factor-like [Gossypium raimondii]
10 Hb_000445_450 0.2914371911 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
11 Hb_001369_280 0.2962385345 - - PREDICTED: pentatricopeptide repeat-containing protein At5g64320, mitochondrial-like isoform X3 [Solanum tuberosum]
12 Hb_000011_430 0.3062335684 - - zinc finger protein, putative [Ricinus communis]
13 Hb_036790_010 0.3078499273 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
14 Hb_002057_010 0.3102591152 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
15 Hb_007072_020 0.3104030593 transcription factor TF Family: bHLH lMYC5 [Hevea brasiliensis]
16 Hb_003096_050 0.3207775629 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001045_050 0.3244096241 transcription factor TF Family: WRKY hypothetical protein POPTR_0001s33560g [Populus trichocarpa]
18 Hb_005000_040 0.3272115434 - - ACC oxidase ACCO2 [Manihot esculenta]
19 Hb_080225_010 0.3302875027 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
20 Hb_000032_580 0.333937656 - - hypothetical protein RCOM_1311780 [Ricinus communis]

Gene co-expression network

sample Hb_153470_010 Hb_153470_010 Hb_002374_500 Hb_002374_500 Hb_153470_010--Hb_002374_500 Hb_006355_030 Hb_006355_030 Hb_153470_010--Hb_006355_030 Hb_041362_010 Hb_041362_010 Hb_153470_010--Hb_041362_010 Hb_003141_020 Hb_003141_020 Hb_153470_010--Hb_003141_020 Hb_024898_020 Hb_024898_020 Hb_153470_010--Hb_024898_020 Hb_007520_040 Hb_007520_040 Hb_153470_010--Hb_007520_040 Hb_003095_090 Hb_003095_090 Hb_002374_500--Hb_003095_090 Hb_002374_500--Hb_024898_020 Hb_002374_500--Hb_041362_010 Hb_006655_040 Hb_006655_040 Hb_002374_500--Hb_006655_040 Hb_003626_010 Hb_003626_010 Hb_002374_500--Hb_003626_010 Hb_006355_030--Hb_007520_040 Hb_000445_450 Hb_000445_450 Hb_006355_030--Hb_000445_450 Hb_003057_080 Hb_003057_080 Hb_006355_030--Hb_003057_080 Hb_007072_020 Hb_007072_020 Hb_006355_030--Hb_007072_020 Hb_002311_240 Hb_002311_240 Hb_006355_030--Hb_002311_240 Hb_000500_110 Hb_000500_110 Hb_006355_030--Hb_000500_110 Hb_012136_010 Hb_012136_010 Hb_041362_010--Hb_012136_010 Hb_005066_060 Hb_005066_060 Hb_041362_010--Hb_005066_060 Hb_006533_010 Hb_006533_010 Hb_041362_010--Hb_006533_010 Hb_005563_020 Hb_005563_020 Hb_041362_010--Hb_005563_020 Hb_119748_010 Hb_119748_010 Hb_041362_010--Hb_119748_010 Hb_041362_010--Hb_003141_020 Hb_000069_050 Hb_000069_050 Hb_003141_020--Hb_000069_050 Hb_000836_400 Hb_000836_400 Hb_003141_020--Hb_000836_400 Hb_015146_010 Hb_015146_010 Hb_003141_020--Hb_015146_010 Hb_078903_010 Hb_078903_010 Hb_003141_020--Hb_078903_010 Hb_001652_060 Hb_001652_060 Hb_003141_020--Hb_001652_060 Hb_001798_020 Hb_001798_020 Hb_024898_020--Hb_001798_020 Hb_164646_010 Hb_164646_010 Hb_024898_020--Hb_164646_010 Hb_083103_030 Hb_083103_030 Hb_024898_020--Hb_083103_030 Hb_103832_030 Hb_103832_030 Hb_024898_020--Hb_103832_030 Hb_007520_040--Hb_000445_450 Hb_007520_040--Hb_000500_110 Hb_007520_040--Hb_003057_080 Hb_000213_130 Hb_000213_130 Hb_007520_040--Hb_000213_130 Hb_002876_310 Hb_002876_310 Hb_007520_040--Hb_002876_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.21054 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.392539 0 1.28376 0

CAGE analysis