Hb_153533_010

Information

Type -
Description -
Location Contig153533: 1-530
Sequence    

Annotation

kegg
ID rcu:RCOM_0923140
description cysteinyl-tRNA synthetase, putative (EC:6.1.1.16)
nr
ID XP_012076503.1
description PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
swissprot
ID C4XSW5
description Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1
trembl
ID A0A067KP27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07135 PE=3 SV=1
Gene Ontology
ID GO:0009507
description cysteine--trna cytoplasmic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_153533_010 0.0 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic isoform X3 [Jatropha curcas]
2 Hb_000193_270 0.0868154023 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
3 Hb_004994_380 0.1083041514 - - hypothetical protein JCGZ_14410 [Jatropha curcas]
4 Hb_001951_180 0.1121136713 - - PREDICTED: carboxyl-terminal-processing peptidase 1, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_003663_060 0.1161573115 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g43820 [Jatropha curcas]
6 Hb_035755_010 0.1162234828 - - unknown [Populus trichocarpa]
7 Hb_004218_280 0.117772493 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
8 Hb_105123_010 0.1178398406 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
9 Hb_010710_070 0.1183926822 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
10 Hb_011021_020 0.1186924748 - - PREDICTED: uncharacterized protein LOC105644392 isoform X2 [Jatropha curcas]
11 Hb_000627_030 0.1200839785 - - amine oxidase, putative [Ricinus communis]
12 Hb_008489_020 0.1229608262 - - PREDICTED: uncharacterized protein LOC105644663 [Jatropha curcas]
13 Hb_000111_420 0.1239678261 - - PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Populus euphratica]
14 Hb_000638_120 0.1263168087 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
15 Hb_002188_120 0.1267802589 - - PREDICTED: thymocyte nuclear protein 1 [Pyrus x bretschneideri]
16 Hb_000134_310 0.1270479129 - - PREDICTED: protein gamma response 1 isoform X1 [Jatropha curcas]
17 Hb_009467_060 0.1278155183 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_012098_080 0.1281430497 - - KOM, putative [Ricinus communis]
19 Hb_003440_060 0.1283558617 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
20 Hb_000922_410 0.1287745015 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_153533_010 Hb_153533_010 Hb_000193_270 Hb_000193_270 Hb_153533_010--Hb_000193_270 Hb_004994_380 Hb_004994_380 Hb_153533_010--Hb_004994_380 Hb_001951_180 Hb_001951_180 Hb_153533_010--Hb_001951_180 Hb_003663_060 Hb_003663_060 Hb_153533_010--Hb_003663_060 Hb_035755_010 Hb_035755_010 Hb_153533_010--Hb_035755_010 Hb_004218_280 Hb_004218_280 Hb_153533_010--Hb_004218_280 Hb_000599_300 Hb_000599_300 Hb_000193_270--Hb_000599_300 Hb_005078_010 Hb_005078_010 Hb_000193_270--Hb_005078_010 Hb_009117_030 Hb_009117_030 Hb_000193_270--Hb_009117_030 Hb_003633_030 Hb_003633_030 Hb_000193_270--Hb_003633_030 Hb_011021_020 Hb_011021_020 Hb_000193_270--Hb_011021_020 Hb_010710_070 Hb_010710_070 Hb_004994_380--Hb_010710_070 Hb_000076_130 Hb_000076_130 Hb_004994_380--Hb_000076_130 Hb_001014_160 Hb_001014_160 Hb_004994_380--Hb_001014_160 Hb_188063_020 Hb_188063_020 Hb_004994_380--Hb_188063_020 Hb_001141_020 Hb_001141_020 Hb_004994_380--Hb_001141_020 Hb_004963_030 Hb_004963_030 Hb_004994_380--Hb_004963_030 Hb_002276_020 Hb_002276_020 Hb_001951_180--Hb_002276_020 Hb_036790_080 Hb_036790_080 Hb_001951_180--Hb_036790_080 Hb_011316_090 Hb_011316_090 Hb_001951_180--Hb_011316_090 Hb_005253_030 Hb_005253_030 Hb_001951_180--Hb_005253_030 Hb_000261_060 Hb_000261_060 Hb_001951_180--Hb_000261_060 Hb_002681_070 Hb_002681_070 Hb_003663_060--Hb_002681_070 Hb_006915_070 Hb_006915_070 Hb_003663_060--Hb_006915_070 Hb_000861_020 Hb_000861_020 Hb_003663_060--Hb_000861_020 Hb_000631_080 Hb_000631_080 Hb_003663_060--Hb_000631_080 Hb_003663_060--Hb_004994_380 Hb_000753_200 Hb_000753_200 Hb_035755_010--Hb_000753_200 Hb_035755_010--Hb_001014_160 Hb_008785_040 Hb_008785_040 Hb_035755_010--Hb_008785_040 Hb_001123_260 Hb_001123_260 Hb_035755_010--Hb_001123_260 Hb_035755_010--Hb_004963_030 Hb_035755_010--Hb_010710_070 Hb_000740_050 Hb_000740_050 Hb_004218_280--Hb_000740_050 Hb_007441_130 Hb_007441_130 Hb_004218_280--Hb_007441_130 Hb_003462_070 Hb_003462_070 Hb_004218_280--Hb_003462_070 Hb_004218_280--Hb_000076_130 Hb_007919_100 Hb_007919_100 Hb_004218_280--Hb_007919_100 Hb_003438_050 Hb_003438_050 Hb_004218_280--Hb_003438_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.80932 2.49719 3.20584 3.47802 6.74665 11.6475
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.50852 5.21383 3.66868 5.1418 10.8429

CAGE analysis