Hb_154038_020

Information

Type -
Description -
Location Contig154038: 18641-26969
Sequence    

Annotation

kegg
ID rcu:RCOM_0787740
description DNA repair and recombination protein radB, putative
nr
ID KDP44181.1
description hypothetical protein JCGZ_05648 [Jatropha curcas]
swissprot
ID Q9LQQ2
description DNA repair protein RAD51 homolog 4 OS=Arabidopsis thaliana GN=RAD51D PE=2 SV=2
trembl
ID A0A067L6U7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05648 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna repair protein rad51 homolog 4 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13255: 18641-26880 , PASA_asmbl_13256: 18646-26423 , PASA_asmbl_13257: 20152-20360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154038_020 0.0 - - hypothetical protein JCGZ_05648 [Jatropha curcas]
2 Hb_003602_060 0.0804204448 - - PREDICTED: phosphoglycerate mutase-like protein 1 [Jatropha curcas]
3 Hb_001767_060 0.1136762754 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_065525_120 0.1183923267 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
5 Hb_009780_050 0.1281198828 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_001904_050 0.1304290396 - - alpha-tubulin 1 [Hevea brasiliensis]
7 Hb_093458_010 0.13052161 - - hypothetical protein CISIN_1g0277592mg [Citrus sinensis]
8 Hb_000032_370 0.1310624898 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
9 Hb_000008_400 0.1341214753 - - PREDICTED: classical arabinogalactan protein 10-like [Nicotiana tomentosiformis]
10 Hb_001301_340 0.1342795079 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
11 Hb_007441_080 0.1361939337 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
12 Hb_068194_010 0.14054652 - - hypothetical protein POPTR_0010s23740g [Populus trichocarpa]
13 Hb_004317_030 0.1406876162 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
14 Hb_006445_020 0.1411363465 - - hypothetical protein L484_026741 [Morus notabilis]
15 Hb_001221_030 0.1422090878 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
16 Hb_027506_040 0.1429519819 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
17 Hb_000392_550 0.1441535179 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002027_440 0.1460861129 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004984_030 0.1462016754 - - protein with unknown function [Ricinus communis]
20 Hb_004965_110 0.1462779219 - - PREDICTED: folylpolyglutamate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_154038_020 Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_154038_020--Hb_003602_060 Hb_001767_060 Hb_001767_060 Hb_154038_020--Hb_001767_060 Hb_065525_120 Hb_065525_120 Hb_154038_020--Hb_065525_120 Hb_009780_050 Hb_009780_050 Hb_154038_020--Hb_009780_050 Hb_001904_050 Hb_001904_050 Hb_154038_020--Hb_001904_050 Hb_093458_010 Hb_093458_010 Hb_154038_020--Hb_093458_010 Hb_003602_060--Hb_093458_010 Hb_027506_040 Hb_027506_040 Hb_003602_060--Hb_027506_040 Hb_007441_080 Hb_007441_080 Hb_003602_060--Hb_007441_080 Hb_001863_070 Hb_001863_070 Hb_003602_060--Hb_001863_070 Hb_002007_320 Hb_002007_320 Hb_003602_060--Hb_002007_320 Hb_001767_060--Hb_093458_010 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_052764_070 Hb_052764_070 Hb_001767_060--Hb_052764_070 Hb_000032_370 Hb_000032_370 Hb_065525_120--Hb_000032_370 Hb_027298_010 Hb_027298_010 Hb_065525_120--Hb_027298_010 Hb_065525_120--Hb_009780_050 Hb_001671_030 Hb_001671_030 Hb_065525_120--Hb_001671_030 Hb_065525_120--Hb_007441_080 Hb_000176_010 Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_000167_050 Hb_000167_050 Hb_009780_050--Hb_000167_050 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_001124_180 Hb_001124_180 Hb_009780_050--Hb_001124_180 Hb_031527_110 Hb_031527_110 Hb_001904_050--Hb_031527_110 Hb_006711_090 Hb_006711_090 Hb_001904_050--Hb_006711_090 Hb_000742_020 Hb_000742_020 Hb_001904_050--Hb_000742_020 Hb_001904_050--Hb_007441_080 Hb_000181_350 Hb_000181_350 Hb_001904_050--Hb_000181_350 Hb_093458_010--Hb_015807_160 Hb_040819_010 Hb_040819_010 Hb_093458_010--Hb_040819_010 Hb_093458_010--Hb_001863_070 Hb_000645_200 Hb_000645_200 Hb_093458_010--Hb_000645_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.96312 2.5451 18.8714 16.6634 0.978722 1.67664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.21553 13.9254 7.17172 4.90678 11.5912

CAGE analysis