Hb_154038_040

Information

Type -
Description -
Location Contig154038: 32417-35856
Sequence    

Annotation

kegg
ID rcu:RCOM_0787760
description nutrient reservoir, putative
nr
ID XP_002531106.1
description nutrient reservoir, putative [Ricinus communis]
swissprot
ID Q9XHP0
description 11S globulin seed storage protein 2 OS=Sesamum indicum PE=2 SV=1
trembl
ID B9SYN7
description Nutrient reservoir, putative OS=Ricinus communis GN=RCOM_0787760 PE=4 SV=1
Gene Ontology
ID GO:0045735
description cupin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13258: 33922-35813 , PASA_asmbl_13259: 34552-35019
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154038_040 0.0 - - nutrient reservoir, putative [Ricinus communis]
2 Hb_001117_180 0.0751303064 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
3 Hb_000028_550 0.1035061055 - - unknown [Medicago truncatula]
4 Hb_000384_020 0.1041180118 - - sucrose phosphate syntase, putative [Ricinus communis]
5 Hb_001688_030 0.104820673 - - hypothetical protein JCGZ_10716 [Jatropha curcas]
6 Hb_004558_060 0.1072388372 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-4 [Jatropha curcas]
7 Hb_002518_020 0.1101268255 - - PREDICTED: uncharacterized protein LOC105631164 [Jatropha curcas]
8 Hb_068804_180 0.113633957 - - PREDICTED: TRAF-type zinc finger domain-containing protein 1 [Beta vulgaris subsp. vulgaris]
9 Hb_022693_090 0.1147180847 - - glycosyltransferase, putative [Ricinus communis]
10 Hb_035995_010 0.1171476305 - - -
11 Hb_122951_010 0.1201318815 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
12 Hb_008021_050 0.1203896541 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_000162_070 0.120865739 - - phospholipase C, putative [Ricinus communis]
14 Hb_002384_030 0.1210032518 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002370_050 0.1214765757 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
16 Hb_027405_010 0.1221284673 - - PREDICTED: uncharacterized protein At3g17950-like [Populus euphratica]
17 Hb_023308_010 0.1224713495 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
18 Hb_026144_040 0.12260997 - - -
19 Hb_002522_040 0.1244572738 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
20 Hb_000045_080 0.1254071862 - - amino acid transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_154038_040 Hb_154038_040 Hb_001117_180 Hb_001117_180 Hb_154038_040--Hb_001117_180 Hb_000028_550 Hb_000028_550 Hb_154038_040--Hb_000028_550 Hb_000384_020 Hb_000384_020 Hb_154038_040--Hb_000384_020 Hb_001688_030 Hb_001688_030 Hb_154038_040--Hb_001688_030 Hb_004558_060 Hb_004558_060 Hb_154038_040--Hb_004558_060 Hb_002518_020 Hb_002518_020 Hb_154038_040--Hb_002518_020 Hb_002811_110 Hb_002811_110 Hb_001117_180--Hb_002811_110 Hb_027405_010 Hb_027405_010 Hb_001117_180--Hb_027405_010 Hb_000162_070 Hb_000162_070 Hb_001117_180--Hb_000162_070 Hb_002592_070 Hb_002592_070 Hb_001117_180--Hb_002592_070 Hb_002522_040 Hb_002522_040 Hb_001117_180--Hb_002522_040 Hb_000028_580 Hb_000028_580 Hb_000028_550--Hb_000028_580 Hb_004117_020 Hb_004117_020 Hb_000028_550--Hb_004117_020 Hb_002768_040 Hb_002768_040 Hb_000028_550--Hb_002768_040 Hb_022693_090 Hb_022693_090 Hb_000028_550--Hb_022693_090 Hb_000028_550--Hb_001117_180 Hb_173107_020 Hb_173107_020 Hb_000384_020--Hb_173107_020 Hb_000816_150 Hb_000816_150 Hb_000384_020--Hb_000816_150 Hb_114733_010 Hb_114733_010 Hb_000384_020--Hb_114733_010 Hb_000991_080 Hb_000991_080 Hb_000384_020--Hb_000991_080 Hb_000384_020--Hb_000162_070 Hb_000045_080 Hb_000045_080 Hb_000384_020--Hb_000045_080 Hb_008021_050 Hb_008021_050 Hb_001688_030--Hb_008021_050 Hb_000093_010 Hb_000093_010 Hb_001688_030--Hb_000093_010 Hb_001360_020 Hb_001360_020 Hb_001688_030--Hb_001360_020 Hb_002384_030 Hb_002384_030 Hb_001688_030--Hb_002384_030 Hb_133492_010 Hb_133492_010 Hb_001688_030--Hb_133492_010 Hb_001369_190 Hb_001369_190 Hb_004558_060--Hb_001369_190 Hb_009736_020 Hb_009736_020 Hb_004558_060--Hb_009736_020 Hb_002171_020 Hb_002171_020 Hb_004558_060--Hb_002171_020 Hb_005648_020 Hb_005648_020 Hb_004558_060--Hb_005648_020 Hb_004558_060--Hb_002518_020 Hb_002918_270 Hb_002918_270 Hb_004558_060--Hb_002918_270 Hb_005000_280 Hb_005000_280 Hb_002518_020--Hb_005000_280 Hb_001769_070 Hb_001769_070 Hb_002518_020--Hb_001769_070 Hb_000076_280 Hb_000076_280 Hb_002518_020--Hb_000076_280 Hb_002518_020--Hb_002171_020 Hb_000329_010 Hb_000329_010 Hb_002518_020--Hb_000329_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112271 4.08428 3.53412 15.5975 0.122885 0.190654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0734937 0 2.22803 4.68193

CAGE analysis