Hb_154114_010

Information

Type -
Description -
Location Contig154114: 7136-17841
Sequence    

Annotation

kegg
ID rcu:RCOM_1505110
description DNA binding protein, putative
nr
ID XP_012090650.1
description PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
swissprot
ID Q8W475
description SWI/SNF complex subunit SWI3A OS=Arabidopsis thaliana GN=SWI3A PE=1 SV=1
trembl
ID A0A067JIC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26414 PE=4 SV=1
Gene Ontology
ID GO:0005634
description swi snf complex subunit swi3a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13322: 7214-12925 , PASA_asmbl_13326: 17628-18036
cDNA
(Sanger)
(ID:Location)		 040_I21.ab1: 7214-8779

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154114_010 0.0 - - PREDICTED: SWI/SNF complex subunit SWI3A isoform X2 [Jatropha curcas]
2 Hb_000594_040 0.0569920016 - - hypothetical protein L484_013922 [Morus notabilis]
3 Hb_004128_050 0.0674282693 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
4 Hb_002876_130 0.0684305883 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
5 Hb_000291_060 0.0686760165 transcription factor TF Family: C2H2 PREDICTED: MYST-like histone acetyltransferase 2 [Jatropha curcas]
6 Hb_002835_230 0.0694855634 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
7 Hb_000289_040 0.0704904258 - - Poly(A) polymerase alpha, putative [Ricinus communis]
8 Hb_008147_040 0.0712002764 - - PREDICTED: protein FLX-like 2 [Jatropha curcas]
9 Hb_000664_070 0.0720791283 - - PREDICTED: protein cereblon [Jatropha curcas]
10 Hb_003371_110 0.0732824629 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
11 Hb_000190_120 0.0734938872 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
12 Hb_000928_220 0.0741199884 - - PREDICTED: protein SCAI [Jatropha curcas]
13 Hb_006816_050 0.0743190577 - - PREDICTED: RNA polymerase II-associated protein 3 isoform X4 [Jatropha curcas]
14 Hb_002078_110 0.0748579598 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
15 Hb_004195_200 0.0749611315 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
16 Hb_000366_120 0.0759466631 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
17 Hb_000116_060 0.0761001572 - - plant ubiquilin, putative [Ricinus communis]
18 Hb_008103_060 0.0763567187 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
19 Hb_007635_030 0.07655722 - - PREDICTED: pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like [Jatropha curcas]
20 Hb_002174_020 0.0769833005 - - ring finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_154114_010 Hb_154114_010 Hb_000594_040 Hb_000594_040 Hb_154114_010--Hb_000594_040 Hb_004128_050 Hb_004128_050 Hb_154114_010--Hb_004128_050 Hb_002876_130 Hb_002876_130 Hb_154114_010--Hb_002876_130 Hb_000291_060 Hb_000291_060 Hb_154114_010--Hb_000291_060 Hb_002835_230 Hb_002835_230 Hb_154114_010--Hb_002835_230 Hb_000289_040 Hb_000289_040 Hb_154114_010--Hb_000289_040 Hb_005260_010 Hb_005260_010 Hb_000594_040--Hb_005260_010 Hb_000664_070 Hb_000664_070 Hb_000594_040--Hb_000664_070 Hb_002163_010 Hb_002163_010 Hb_000594_040--Hb_002163_010 Hb_000418_140 Hb_000418_140 Hb_000594_040--Hb_000418_140 Hb_008147_040 Hb_008147_040 Hb_000594_040--Hb_008147_040 Hb_006252_020 Hb_006252_020 Hb_004128_050--Hb_006252_020 Hb_003785_040 Hb_003785_040 Hb_004128_050--Hb_003785_040 Hb_002042_140 Hb_002042_140 Hb_004128_050--Hb_002042_140 Hb_005489_080 Hb_005489_080 Hb_004128_050--Hb_005489_080 Hb_000768_070 Hb_000768_070 Hb_004128_050--Hb_000768_070 Hb_000190_120 Hb_000190_120 Hb_004128_050--Hb_000190_120 Hb_002876_130--Hb_000289_040 Hb_000928_220 Hb_000928_220 Hb_002876_130--Hb_000928_220 Hb_140049_040 Hb_140049_040 Hb_002876_130--Hb_140049_040 Hb_002078_110 Hb_002078_110 Hb_002876_130--Hb_002078_110 Hb_004195_200 Hb_004195_200 Hb_002876_130--Hb_004195_200 Hb_000076_160 Hb_000076_160 Hb_002876_130--Hb_000076_160 Hb_006816_050 Hb_006816_050 Hb_000291_060--Hb_006816_050 Hb_001143_180 Hb_001143_180 Hb_000291_060--Hb_001143_180 Hb_000291_060--Hb_002078_110 Hb_111198_010 Hb_111198_010 Hb_000291_060--Hb_111198_010 Hb_001030_110 Hb_001030_110 Hb_000291_060--Hb_001030_110 Hb_004785_100 Hb_004785_100 Hb_002835_230--Hb_004785_100 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002823_030 Hb_002823_030 Hb_002835_230--Hb_002823_030 Hb_014361_070 Hb_014361_070 Hb_002835_230--Hb_014361_070 Hb_000289_040--Hb_140049_040 Hb_000289_040--Hb_014361_070 Hb_000679_310 Hb_000679_310 Hb_000289_040--Hb_000679_310 Hb_001104_160 Hb_001104_160 Hb_000289_040--Hb_001104_160 Hb_000614_210 Hb_000614_210 Hb_000289_040--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.891 19.5301 10.6936 11.1821 19.6993 16.1615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.436 8.46849 8.10282 12.1143 8.29181

CAGE analysis