Hb_154114_020

Information

Type -
Description -
Location Contig154114: 10843-11761
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 040_I21r.ab1: 11745-12925

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154114_020 0.0 - - -
2 Hb_038601_010 0.147334363 - - PREDICTED: uncharacterized protein LOC102606280 [Solanum tuberosum]
3 Hb_002435_070 0.1682816173 - - hypothetical protein JCGZ_05738 [Jatropha curcas]
4 Hb_000122_090 0.1763489486 - - hypothetical protein RCOM_0688100 [Ricinus communis]
5 Hb_000340_070 0.1921393364 - - PREDICTED: CSC1-like protein At4g02900 [Jatropha curcas]
6 Hb_008764_010 0.1973486704 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
7 Hb_000025_390 0.2056166796 - - PREDICTED: putative DNA-binding protein ESCAROLA [Populus euphratica]
8 Hb_006570_130 0.2098046306 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004725_040 0.2165029519 - - -
10 Hb_000604_080 0.2188555299 - - Fgenesh protein [Medicago truncatula]
11 Hb_009554_020 0.2247370805 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
12 Hb_007970_030 0.2329970675 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
13 Hb_002534_040 0.2336288775 - - Calmodulin, putative [Ricinus communis]
14 Hb_182291_020 0.2337912337 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
15 Hb_000116_340 0.2347451276 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
16 Hb_005015_040 0.23630965 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
17 Hb_010672_040 0.2382860132 rubber biosynthesis Gene Name: Geranyl geranyl diphosphate synthase geranyl-diphosphate synthase [Hevea brasiliensis]
18 Hb_000069_250 0.2393233385 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
19 Hb_003767_020 0.2426382471 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
20 Hb_000160_340 0.2460453275 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_154114_020 Hb_154114_020 Hb_038601_010 Hb_038601_010 Hb_154114_020--Hb_038601_010 Hb_002435_070 Hb_002435_070 Hb_154114_020--Hb_002435_070 Hb_000122_090 Hb_000122_090 Hb_154114_020--Hb_000122_090 Hb_000340_070 Hb_000340_070 Hb_154114_020--Hb_000340_070 Hb_008764_010 Hb_008764_010 Hb_154114_020--Hb_008764_010 Hb_000025_390 Hb_000025_390 Hb_154114_020--Hb_000025_390 Hb_038601_010--Hb_002435_070 Hb_006570_130 Hb_006570_130 Hb_038601_010--Hb_006570_130 Hb_004725_040 Hb_004725_040 Hb_038601_010--Hb_004725_040 Hb_028707_060 Hb_028707_060 Hb_038601_010--Hb_028707_060 Hb_038601_010--Hb_008764_010 Hb_002435_070--Hb_004725_040 Hb_002435_070--Hb_008764_010 Hb_002435_070--Hb_006570_130 Hb_011671_200 Hb_011671_200 Hb_002435_070--Hb_011671_200 Hb_000604_080 Hb_000604_080 Hb_002435_070--Hb_000604_080 Hb_000122_090--Hb_000025_390 Hb_000069_250 Hb_000069_250 Hb_000122_090--Hb_000069_250 Hb_000122_090--Hb_000340_070 Hb_000042_020 Hb_000042_020 Hb_000122_090--Hb_000042_020 Hb_002534_040 Hb_002534_040 Hb_000122_090--Hb_002534_040 Hb_000340_070--Hb_002534_040 Hb_000340_070--Hb_000604_080 Hb_002435_010 Hb_002435_010 Hb_000340_070--Hb_002435_010 Hb_000574_270 Hb_000574_270 Hb_000340_070--Hb_000574_270 Hb_150745_010 Hb_150745_010 Hb_000340_070--Hb_150745_010 Hb_000668_190 Hb_000668_190 Hb_000340_070--Hb_000668_190 Hb_005211_110 Hb_005211_110 Hb_008764_010--Hb_005211_110 Hb_048308_010 Hb_048308_010 Hb_008764_010--Hb_048308_010 Hb_001246_150 Hb_001246_150 Hb_008764_010--Hb_001246_150 Hb_008764_010--Hb_004725_040 Hb_142734_020 Hb_142734_020 Hb_008764_010--Hb_142734_020 Hb_000025_390--Hb_000069_250 Hb_005015_040 Hb_005015_040 Hb_000025_390--Hb_005015_040 Hb_010672_040 Hb_010672_040 Hb_000025_390--Hb_010672_040 Hb_009554_020 Hb_009554_020 Hb_000025_390--Hb_009554_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.229858 1.59137 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196202 0

CAGE analysis