Hb_154340_010

Information

Type -
Description -
Location Contig154340: 6815-8773
Sequence    

Annotation

kegg
ID fve:101312345
description nitrate transporter 1.1-like
nr
ID ACT66297.1
description truncated nitrate transporter [Fragaria vesca]
swissprot
ID Q05085
description Protein NRT1/ PTR FAMILY 6.3 OS=Arabidopsis thaliana GN=NPF6.3 PE=1 SV=1
trembl
ID C7BC74
description Truncated nitrate transporter (Fragment) OS=Fragaria vesca PE=4 SV=1
Gene Ontology
ID GO:0005886
description nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154340_010 0.0 - - truncated nitrate transporter [Fragaria vesca]
2 Hb_000638_040 0.165157498 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max]
3 Hb_005142_010 0.1840468109 - - -
4 Hb_060455_010 0.1843119207 - - 50 kDa protein [Hevea brasiliensis]
5 Hb_005841_030 0.1853389899 - - -
6 Hb_000572_050 0.1880480979 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Cicer arietinum]
7 Hb_000083_040 0.1883999708 - - conserved hypothetical protein [Ricinus communis]
8 Hb_008839_030 0.1910185491 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001403_030 0.2022877004 - - -
10 Hb_000971_060 0.2046344174 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000201_020 0.2056635986 - - hypothetical protein CICLE_v10024145mg [Citrus clementina]
12 Hb_001545_250 0.2058639385 - - PREDICTED: uncharacterized protein LOC103936764 [Pyrus x bretschneideri]
13 Hb_010760_010 0.2104616861 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_006355_050 0.2112026968 - - -
15 Hb_070247_010 0.2135349394 - - hypothetical protein [Pseudomonas tolaasii]
16 Hb_000009_070 0.2143740573 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
17 Hb_020818_010 0.214403273 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
18 Hb_000450_140 0.2157353766 - - hypothetical protein POPTR_0009s06810g [Populus trichocarpa]
19 Hb_012286_070 0.2157900783 - - PREDICTED: uncharacterized protein LOC105641750 [Jatropha curcas]
20 Hb_074238_010 0.2167246371 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]

Gene co-expression network

sample Hb_154340_010 Hb_154340_010 Hb_000638_040 Hb_000638_040 Hb_154340_010--Hb_000638_040 Hb_005142_010 Hb_005142_010 Hb_154340_010--Hb_005142_010 Hb_060455_010 Hb_060455_010 Hb_154340_010--Hb_060455_010 Hb_005841_030 Hb_005841_030 Hb_154340_010--Hb_005841_030 Hb_000572_050 Hb_000572_050 Hb_154340_010--Hb_000572_050 Hb_000083_040 Hb_000083_040 Hb_154340_010--Hb_000083_040 Hb_000638_040--Hb_005142_010 Hb_000638_040--Hb_005841_030 Hb_000638_040--Hb_000572_050 Hb_001403_030 Hb_001403_030 Hb_000638_040--Hb_001403_030 Hb_000971_060 Hb_000971_060 Hb_000638_040--Hb_000971_060 Hb_000201_020 Hb_000201_020 Hb_000638_040--Hb_000201_020 Hb_005142_010--Hb_005841_030 Hb_005142_010--Hb_000572_050 Hb_005142_010--Hb_001403_030 Hb_005142_010--Hb_000971_060 Hb_005142_010--Hb_000201_020 Hb_001545_250 Hb_001545_250 Hb_005142_010--Hb_001545_250 Hb_008839_030 Hb_008839_030 Hb_060455_010--Hb_008839_030 Hb_060455_010--Hb_005142_010 Hb_060455_010--Hb_005841_030 Hb_060455_010--Hb_000572_050 Hb_060455_010--Hb_001403_030 Hb_060455_010--Hb_000971_060 Hb_005841_030--Hb_000572_050 Hb_005841_030--Hb_001403_030 Hb_005841_030--Hb_000971_060 Hb_005841_030--Hb_000201_020 Hb_005841_030--Hb_001545_250 Hb_000572_050--Hb_001403_030 Hb_000572_050--Hb_000971_060 Hb_000572_050--Hb_000201_020 Hb_000572_050--Hb_001545_250 Hb_006355_050 Hb_006355_050 Hb_000083_040--Hb_006355_050 Hb_074238_010 Hb_074238_010 Hb_000083_040--Hb_074238_010 Hb_007177_010 Hb_007177_010 Hb_000083_040--Hb_007177_010 Hb_005020_010 Hb_005020_010 Hb_000083_040--Hb_005020_010 Hb_000705_280 Hb_000705_280 Hb_000083_040--Hb_000705_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0912909 0 0.621428 0.0867583 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.812706 0.63837 33.864 1.16482 0

CAGE analysis