Hb_154466_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig154466: 460-2046
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_011034099.1
description PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
swissprot
ID Q39214
description Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154466_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
2 Hb_002010_020 0.069018102 - - PREDICTED: anthocyanidin 3-O-glucosyltransferase 2-like [Jatropha curcas]
3 Hb_002471_190 0.0730569162 - - PREDICTED: U-box domain-containing protein 21-like [Jatropha curcas]
4 Hb_002391_020 0.0775593658 transcription factor TF Family: NAC PREDICTED: putative NAC domain-containing protein 94 [Jatropha curcas]
5 Hb_001619_140 0.0885021098 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
6 Hb_008202_020 0.0980216922 - - receptor serine/threonine kinase, putative [Ricinus communis]
7 Hb_158111_010 0.1004388435 - - S-locus-specific glycoprotein precursor, putative [Ricinus communis]
8 Hb_004109_240 0.1038034777 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
9 Hb_004899_360 0.1160311859 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_000359_260 0.1184719449 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Jatropha curcas]
11 Hb_001635_230 0.1199961063 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
12 Hb_120011_010 0.1228061231 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
13 Hb_017693_040 0.125630942 - - tyrosine kinase family protein [Medicago truncatula]
14 Hb_000087_200 0.1272248411 - - PREDICTED: uncharacterized protein LOC105641954 [Jatropha curcas]
15 Hb_002615_010 0.1281910063 - - Uncharacterized protein TCM_040942 [Theobroma cacao]
16 Hb_000571_030 0.1333220129 - - ammonium transporter, putative [Ricinus communis]
17 Hb_001310_010 0.1439424045 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type [Jatropha curcas]
18 Hb_002107_110 0.1445955261 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 6 isoform X1 [Jatropha curcas]
19 Hb_074672_010 0.1458217963 - - receptor serine/threonine kinase, putative [Ricinus communis]
20 Hb_021254_020 0.1494407524 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_154466_010 Hb_154466_010 Hb_002010_020 Hb_002010_020 Hb_154466_010--Hb_002010_020 Hb_002471_190 Hb_002471_190 Hb_154466_010--Hb_002471_190 Hb_002391_020 Hb_002391_020 Hb_154466_010--Hb_002391_020 Hb_001619_140 Hb_001619_140 Hb_154466_010--Hb_001619_140 Hb_008202_020 Hb_008202_020 Hb_154466_010--Hb_008202_020 Hb_158111_010 Hb_158111_010 Hb_154466_010--Hb_158111_010 Hb_002010_020--Hb_008202_020 Hb_002010_020--Hb_002471_190 Hb_002010_020--Hb_002391_020 Hb_004899_360 Hb_004899_360 Hb_002010_020--Hb_004899_360 Hb_002010_020--Hb_001619_140 Hb_001635_230 Hb_001635_230 Hb_002471_190--Hb_001635_230 Hb_000087_200 Hb_000087_200 Hb_002471_190--Hb_000087_200 Hb_004109_240 Hb_004109_240 Hb_002471_190--Hb_004109_240 Hb_002471_190--Hb_158111_010 Hb_002391_020--Hb_158111_010 Hb_003119_030 Hb_003119_030 Hb_002391_020--Hb_003119_030 Hb_002391_020--Hb_002471_190 Hb_002391_020--Hb_001619_140 Hb_001619_140--Hb_008202_020 Hb_120011_010 Hb_120011_010 Hb_001619_140--Hb_120011_010 Hb_000571_030 Hb_000571_030 Hb_001619_140--Hb_000571_030 Hb_001619_140--Hb_004899_360 Hb_007858_020 Hb_007858_020 Hb_001619_140--Hb_007858_020 Hb_008202_020--Hb_004899_360 Hb_008202_020--Hb_004109_240 Hb_121540_010 Hb_121540_010 Hb_008202_020--Hb_121540_010 Hb_158111_010--Hb_001635_230 Hb_002615_010 Hb_002615_010 Hb_158111_010--Hb_002615_010 Hb_158111_010--Hb_002010_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0958548 26.5691 16.914 5.15123 0.0764434 0.0750806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0292743 0.0230315 0 3.23362 2.0766

CAGE analysis