Hb_154471_020

Information

Type -
Description -
Location Contig154471: 11799-21364
Sequence    

Annotation

kegg
ID rcu:RCOM_1450010
description farnesyl-diphosphate farnesyltransferase, putative (EC:2.5.1.21)
nr
ID BAH23428.1
description squalene synthetase [Euphorbia tirucalli]
swissprot
ID P53800
description Squalene synthase OS=Nicotiana benthamiana PE=2 SV=1
trembl
ID B9WZW7
description Squalene synthetase OS=Euphorbia tirucalli GN=EtSS PE=2 SV=1
Gene Ontology
ID GO:0016021
description squalene synthase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13350: 11781-21149
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154471_020 0.0 - - squalene synthetase [Euphorbia tirucalli]
2 Hb_002304_150 0.0847376385 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
3 Hb_003531_080 0.0859895874 - - PREDICTED: small G protein signaling modulator 2 isoform X1 [Jatropha curcas]
4 Hb_004097_130 0.0876068378 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
5 Hb_006132_090 0.0932795571 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
6 Hb_062226_130 0.0939097061 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
7 Hb_002754_010 0.0942774071 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
8 Hb_000869_020 0.0943047339 - - PREDICTED: uncharacterized protein LOC105641036 [Jatropha curcas]
9 Hb_000300_500 0.0966786761 - - PREDICTED: uncharacterized protein LOC105632604 [Jatropha curcas]
10 Hb_001124_010 0.0970088208 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X2 [Jatropha curcas]
11 Hb_000392_420 0.0972586031 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
12 Hb_171376_010 0.0974095233 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
13 Hb_000637_110 0.0984007002 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
14 Hb_000375_350 0.099197545 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
15 Hb_003861_060 0.0995215993 - - PREDICTED: treacle protein [Jatropha curcas]
16 Hb_005488_020 0.0998099594 - - PREDICTED: putative mediator of RNA polymerase II transcription subunit 26 [Jatropha curcas]
17 Hb_007317_010 0.1004745802 - - conserved hypothetical protein [Ricinus communis]
18 Hb_009296_070 0.1006153278 - - PREDICTED: cyclin-dependent kinase D-3 isoform X1 [Jatropha curcas]
19 Hb_000349_260 0.1012639972 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
20 Hb_001300_150 0.1016796862 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_154471_020 Hb_154471_020 Hb_002304_150 Hb_002304_150 Hb_154471_020--Hb_002304_150 Hb_003531_080 Hb_003531_080 Hb_154471_020--Hb_003531_080 Hb_004097_130 Hb_004097_130 Hb_154471_020--Hb_004097_130 Hb_006132_090 Hb_006132_090 Hb_154471_020--Hb_006132_090 Hb_062226_130 Hb_062226_130 Hb_154471_020--Hb_062226_130 Hb_002754_010 Hb_002754_010 Hb_154471_020--Hb_002754_010 Hb_001799_030 Hb_001799_030 Hb_002304_150--Hb_001799_030 Hb_012258_010 Hb_012258_010 Hb_002304_150--Hb_012258_010 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_000110_310 Hb_000110_310 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060 Hb_001761_120 Hb_001761_120 Hb_003531_080--Hb_001761_120 Hb_001472_060 Hb_001472_060 Hb_003531_080--Hb_001472_060 Hb_170416_010 Hb_170416_010 Hb_003531_080--Hb_170416_010 Hb_007007_120 Hb_007007_120 Hb_003531_080--Hb_007007_120 Hb_000340_420 Hb_000340_420 Hb_003531_080--Hb_000340_420 Hb_007290_030 Hb_007290_030 Hb_003531_080--Hb_007290_030 Hb_004097_130--Hb_001472_060 Hb_004097_130--Hb_003531_080 Hb_000103_480 Hb_000103_480 Hb_004097_130--Hb_000103_480 Hb_000635_090 Hb_000635_090 Hb_004097_130--Hb_000635_090 Hb_003688_040 Hb_003688_040 Hb_004097_130--Hb_003688_040 Hb_005167_010 Hb_005167_010 Hb_006132_090--Hb_005167_010 Hb_001900_140 Hb_001900_140 Hb_006132_090--Hb_001900_140 Hb_003878_090 Hb_003878_090 Hb_006132_090--Hb_003878_090 Hb_002157_120 Hb_002157_120 Hb_006132_090--Hb_002157_120 Hb_007002_020 Hb_007002_020 Hb_006132_090--Hb_007002_020 Hb_003119_060 Hb_003119_060 Hb_006132_090--Hb_003119_060 Hb_000738_020 Hb_000738_020 Hb_062226_130--Hb_000738_020 Hb_005162_090 Hb_005162_090 Hb_062226_130--Hb_005162_090 Hb_000365_230 Hb_000365_230 Hb_062226_130--Hb_000365_230 Hb_164010_040 Hb_164010_040 Hb_062226_130--Hb_164010_040 Hb_003849_110 Hb_003849_110 Hb_062226_130--Hb_003849_110 Hb_003428_010 Hb_003428_010 Hb_062226_130--Hb_003428_010 Hb_002754_010--Hb_164010_040 Hb_000331_550 Hb_000331_550 Hb_002754_010--Hb_000331_550 Hb_000926_090 Hb_000926_090 Hb_002754_010--Hb_000926_090 Hb_065525_040 Hb_065525_040 Hb_002754_010--Hb_065525_040 Hb_013358_040 Hb_013358_040 Hb_002754_010--Hb_013358_040 Hb_001300_150 Hb_001300_150 Hb_002754_010--Hb_001300_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5386 19.0378 34.1609 33.4786 9.90714 18.9019
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3166 23.0266 30.1156 18.1426 22.3935

CAGE analysis