Hb_154745_010

Information

Type -
Description -
Location Contig154745: 73-810
Sequence    

Annotation

kegg
ID rcu:RCOM_0075460
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_002530253.1
description dead box ATP-dependent RNA helicase, putative [Ricinus communis]
swissprot
ID Q84UQ1
description DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1
trembl
ID B9SW84
description Dead box ATP-dependent RNA helicase, putative OS=Ricinus communis GN=RCOM_0075460 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 42

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154745_010 0.0 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
2 Hb_023386_040 0.0479099911 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
3 Hb_002045_240 0.0610114685 - - 2-methyl-6-phytylbenzoquinone methyltranferase [Hevea brasiliensis]
4 Hb_000345_170 0.0659447493 - - PREDICTED: lysine-specific demethylase JMJ25 isoform X2 [Jatropha curcas]
5 Hb_020000_020 0.0738718836 - - Troponin C, skeletal muscle, putative [Ricinus communis]
6 Hb_001258_090 0.0743251865 - - PREDICTED: protein spt2-like [Jatropha curcas]
7 Hb_110291_010 0.076340641 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000926_190 0.0770843017 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
9 Hb_003878_070 0.0776994368 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
10 Hb_001019_230 0.0779398222 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070 [Jatropha curcas]
11 Hb_165928_020 0.0804634218 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
12 Hb_006252_040 0.0828169621 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
13 Hb_000373_280 0.0828938013 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
14 Hb_007054_060 0.0835327798 - - -
15 Hb_004096_030 0.0845847101 - - PREDICTED: KH domain-containing protein At4g18375-like isoform X1 [Jatropha curcas]
16 Hb_023386_020 0.0846531378 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
17 Hb_004412_010 0.0847086018 - - -
18 Hb_000120_920 0.0847231917 - - poly(A) polymerase, putative [Ricinus communis]
19 Hb_016898_010 0.0848568388 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
20 Hb_156973_010 0.0864532816 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_154745_010 Hb_154745_010 Hb_023386_040 Hb_023386_040 Hb_154745_010--Hb_023386_040 Hb_002045_240 Hb_002045_240 Hb_154745_010--Hb_002045_240 Hb_000345_170 Hb_000345_170 Hb_154745_010--Hb_000345_170 Hb_020000_020 Hb_020000_020 Hb_154745_010--Hb_020000_020 Hb_001258_090 Hb_001258_090 Hb_154745_010--Hb_001258_090 Hb_110291_010 Hb_110291_010 Hb_154745_010--Hb_110291_010 Hb_000926_190 Hb_000926_190 Hb_023386_040--Hb_000926_190 Hb_006252_040 Hb_006252_040 Hb_023386_040--Hb_006252_040 Hb_005914_060 Hb_005914_060 Hb_023386_040--Hb_005914_060 Hb_000179_030 Hb_000179_030 Hb_023386_040--Hb_000179_030 Hb_003952_070 Hb_003952_070 Hb_023386_040--Hb_003952_070 Hb_008643_210 Hb_008643_210 Hb_002045_240--Hb_008643_210 Hb_002045_240--Hb_023386_040 Hb_002045_240--Hb_006252_040 Hb_001097_050 Hb_001097_050 Hb_002045_240--Hb_001097_050 Hb_023480_010 Hb_023480_010 Hb_002045_240--Hb_023480_010 Hb_002890_020 Hb_002890_020 Hb_000345_170--Hb_002890_020 Hb_156973_010 Hb_156973_010 Hb_000345_170--Hb_156973_010 Hb_006915_070 Hb_006915_070 Hb_000345_170--Hb_006915_070 Hb_002527_030 Hb_002527_030 Hb_000345_170--Hb_002527_030 Hb_000345_170--Hb_023386_040 Hb_020000_020--Hb_023386_040 Hb_000820_170 Hb_000820_170 Hb_020000_020--Hb_000820_170 Hb_003609_030 Hb_003609_030 Hb_020000_020--Hb_003609_030 Hb_020000_020--Hb_000179_030 Hb_004370_030 Hb_004370_030 Hb_020000_020--Hb_004370_030 Hb_003010_030 Hb_003010_030 Hb_001258_090--Hb_003010_030 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_000093_160 Hb_000093_160 Hb_001258_090--Hb_000093_160 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58004 3.46711 1.90001 2.19798 3.96076 7.14632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.21241 4.13978 2.54725 2.90513 3.531

CAGE analysis