Hb_154826_010

Information

Type -
Description -
Location Contig154826: 9-437
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154826_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_002471_150 0.0793789383 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
3 Hb_000227_230 0.0898646729 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
4 Hb_003683_040 0.093626428 - - unnamed protein product [Coffea canephora]
5 Hb_004800_070 0.0939265779 - - -
6 Hb_000009_460 0.0992839557 - - conserved hypothetical protein [Ricinus communis]
7 Hb_009793_010 0.1008106018 - - hypothetical protein JCGZ_17222 [Jatropha curcas]
8 Hb_004375_100 0.1049238842 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
9 Hb_002375_090 0.1072333625 - - -
10 Hb_002713_070 0.1100203663 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
11 Hb_027073_040 0.1108716044 - - TGF-beta-inducible nuclear protein, putative [Ricinus communis]
12 Hb_000251_130 0.1115610831 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG14 [Jatropha curcas]
13 Hb_005736_060 0.1116548235 - - PREDICTED: ribosome maturation protein SBDS [Jatropha curcas]
14 Hb_000707_030 0.1128887672 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
15 Hb_033834_040 0.1154739351 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000496_120 0.1157786797 - - PREDICTED: iron-sulfur protein NUBPL [Jatropha curcas]
17 Hb_005618_140 0.115850012 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
18 Hb_000007_100 0.1163558088 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
19 Hb_002311_350 0.1165676832 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
20 Hb_001814_050 0.1165912435 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_154826_010 Hb_154826_010 Hb_002471_150 Hb_002471_150 Hb_154826_010--Hb_002471_150 Hb_000227_230 Hb_000227_230 Hb_154826_010--Hb_000227_230 Hb_003683_040 Hb_003683_040 Hb_154826_010--Hb_003683_040 Hb_004800_070 Hb_004800_070 Hb_154826_010--Hb_004800_070 Hb_000009_460 Hb_000009_460 Hb_154826_010--Hb_000009_460 Hb_009793_010 Hb_009793_010 Hb_154826_010--Hb_009793_010 Hb_002375_090 Hb_002375_090 Hb_002471_150--Hb_002375_090 Hb_002471_150--Hb_009793_010 Hb_172632_090 Hb_172632_090 Hb_002471_150--Hb_172632_090 Hb_002043_130 Hb_002043_130 Hb_002471_150--Hb_002043_130 Hb_002226_070 Hb_002226_070 Hb_002471_150--Hb_002226_070 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_002925_030 Hb_002925_030 Hb_000227_230--Hb_002925_030 Hb_089839_020 Hb_089839_020 Hb_000227_230--Hb_089839_020 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_001505_020 Hb_001505_020 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000196_050 Hb_000196_050 Hb_003683_040--Hb_000196_050 Hb_000184_050 Hb_000184_050 Hb_003683_040--Hb_000184_050 Hb_000815_260 Hb_000815_260 Hb_003683_040--Hb_000815_260 Hb_009554_010 Hb_009554_010 Hb_003683_040--Hb_009554_010 Hb_130291_010 Hb_130291_010 Hb_003683_040--Hb_130291_010 Hb_004800_070--Hb_172632_090 Hb_003126_080 Hb_003126_080 Hb_004800_070--Hb_003126_080 Hb_000258_350 Hb_000258_350 Hb_004800_070--Hb_000258_350 Hb_004223_280 Hb_004223_280 Hb_004800_070--Hb_004223_280 Hb_003976_010 Hb_003976_010 Hb_004800_070--Hb_003976_010 Hb_000058_060 Hb_000058_060 Hb_000009_460--Hb_000058_060 Hb_159809_020 Hb_159809_020 Hb_000009_460--Hb_159809_020 Hb_000574_480 Hb_000574_480 Hb_000009_460--Hb_000574_480 Hb_007416_320 Hb_007416_320 Hb_000009_460--Hb_007416_320 Hb_003787_010 Hb_003787_010 Hb_000009_460--Hb_003787_010 Hb_000307_090 Hb_000307_090 Hb_000009_460--Hb_000307_090 Hb_000007_100 Hb_000007_100 Hb_009793_010--Hb_000007_100 Hb_000926_300 Hb_000926_300 Hb_009793_010--Hb_000926_300 Hb_001814_050 Hb_001814_050 Hb_009793_010--Hb_001814_050 Hb_000152_420 Hb_000152_420 Hb_009793_010--Hb_000152_420 Hb_000707_030 Hb_000707_030 Hb_009793_010--Hb_000707_030 Hb_009793_010--Hb_009554_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.614322 0.542567 0.181697 0.583803 0.942729 0.999335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.2239 2.19728 0.897337 1.22095 0.246791

CAGE analysis