Hb_154948_040

Information

Type -
Description -
Location Contig154948: 40001-43775
Sequence    

Annotation

kegg
ID bvg:104903670
description LAG1 longevity assurance homolog 2
nr
ID KJB79304.1
description hypothetical protein B456_013G043800 [Gossypium raimondii]
swissprot
ID Q9LJK3
description LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1
trembl
ID A0A0D2VAF1
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G043800 PE=4 SV=1
Gene Ontology
ID GO:0005783
description lag1 longevity assurance homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13418: 39957-43744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154948_040 0.0 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
2 Hb_000002_380 0.0667439011 - - PREDICTED: bet1-like SNARE 1-2 [Jatropha curcas]
3 Hb_017895_040 0.0668690012 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
4 Hb_000390_300 0.0695991724 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
5 Hb_002105_100 0.0697674534 - - protein with unknown function [Ricinus communis]
6 Hb_045003_010 0.0716934747 - - Stomatin-1, putative [Ricinus communis]
7 Hb_007878_010 0.0727800927 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
8 Hb_000849_130 0.0773402058 - - PREDICTED: adrenodoxin-like protein, mitochondrial [Nelumbo nucifera]
9 Hb_000005_090 0.0784665264 - - hypothetical protein CICLE_v10029644mg [Citrus clementina]
10 Hb_004108_070 0.078720246 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
11 Hb_006326_040 0.0788830214 - - conserved hypothetical protein [Ricinus communis]
12 Hb_024439_010 0.0794353174 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
13 Hb_003502_090 0.0802876194 - - ATP synthase subunit d, putative [Ricinus communis]
14 Hb_000453_160 0.0810037871 - - vacuolar protein sorting 26, vps26, putative [Ricinus communis]
15 Hb_002171_060 0.0811296806 - - conserved hypothetical protein [Ricinus communis]
16 Hb_161574_020 0.0811706518 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
17 Hb_000805_240 0.0812698417 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
18 Hb_000045_310 0.0816410433 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
19 Hb_006618_120 0.0819374165 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
20 Hb_000317_390 0.0822293264 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]

Gene co-expression network

sample Hb_154948_040 Hb_154948_040 Hb_000002_380 Hb_000002_380 Hb_154948_040--Hb_000002_380 Hb_017895_040 Hb_017895_040 Hb_154948_040--Hb_017895_040 Hb_000390_300 Hb_000390_300 Hb_154948_040--Hb_000390_300 Hb_002105_100 Hb_002105_100 Hb_154948_040--Hb_002105_100 Hb_045003_010 Hb_045003_010 Hb_154948_040--Hb_045003_010 Hb_007878_010 Hb_007878_010 Hb_154948_040--Hb_007878_010 Hb_000002_380--Hb_002105_100 Hb_003108_020 Hb_003108_020 Hb_000002_380--Hb_003108_020 Hb_000453_160 Hb_000453_160 Hb_000002_380--Hb_000453_160 Hb_000656_170 Hb_000656_170 Hb_000002_380--Hb_000656_170 Hb_006573_020 Hb_006573_020 Hb_000002_380--Hb_006573_020 Hb_000375_350 Hb_000375_350 Hb_017895_040--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_005496_140 Hb_005496_140 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_008494_100 Hb_008494_100 Hb_000390_300--Hb_008494_100 Hb_006693_020 Hb_006693_020 Hb_000390_300--Hb_006693_020 Hb_000390_300--Hb_024439_010 Hb_006615_240 Hb_006615_240 Hb_000390_300--Hb_006615_240 Hb_007676_080 Hb_007676_080 Hb_000390_300--Hb_007676_080 Hb_006573_190 Hb_006573_190 Hb_000390_300--Hb_006573_190 Hb_000005_090 Hb_000005_090 Hb_002105_100--Hb_000005_090 Hb_000805_240 Hb_000805_240 Hb_002105_100--Hb_000805_240 Hb_002105_100--Hb_000390_300 Hb_002171_060 Hb_002171_060 Hb_002105_100--Hb_002171_060 Hb_002042_150 Hb_002042_150 Hb_045003_010--Hb_002042_150 Hb_001353_010 Hb_001353_010 Hb_045003_010--Hb_001353_010 Hb_000566_120 Hb_000566_120 Hb_045003_010--Hb_000566_120 Hb_006326_040 Hb_006326_040 Hb_045003_010--Hb_006326_040 Hb_002995_050 Hb_002995_050 Hb_045003_010--Hb_002995_050 Hb_161574_020 Hb_161574_020 Hb_007878_010--Hb_161574_020 Hb_007878_010--Hb_002641_060 Hb_007878_010--Hb_002171_060 Hb_001278_100 Hb_001278_100 Hb_007878_010--Hb_001278_100 Hb_000720_040 Hb_000720_040 Hb_007878_010--Hb_000720_040 Hb_000270_310 Hb_000270_310 Hb_007878_010--Hb_000270_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1779 8.8812 15.5092 28.3839 11.2229 17.8449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.251 31.8004 18.3386 12.1349 11.7411

CAGE analysis