Hb_154997_010

Information

Type -
Description -
Location Contig154997: 121-825
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43680g
description hypothetical protein
nr
ID XP_006370542.1
description hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GWC7
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0001s43680g PE=4 SV=1
Gene Ontology
ID GO:0046872
description protein argonaute 4b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154997_010 0.0 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
2 Hb_006933_010 0.0737813157 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002495_050 0.0939539903 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
4 Hb_001124_170 0.0962865563 - - putative retrotransposon protein [Phyllostachys edulis]
5 Hb_002869_070 0.1254120134 - - -
6 Hb_004124_010 0.1257069616 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_159938_010 0.1269180423 - - phosphoprotein phosphatase, putative [Ricinus communis]
8 Hb_043792_020 0.164126339 - - Retrotransposon gag protein [Medicago truncatula]
9 Hb_021374_020 0.1751787225 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
10 Hb_002473_140 0.1803300839 - - -
11 Hb_171685_030 0.1936819995 - - URF-1 [Citrullus lanatus]
12 Hb_050334_010 0.201581305 - - -
13 Hb_106815_010 0.20279669 - - hypothetical protein, conserved [Eimeria acervulina]
14 Hb_143004_010 0.2030403118 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
15 Hb_170973_010 0.2051528755 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
16 Hb_009268_030 0.2051794223 - - ribosomal protein S7 [Piper cenocladum]
17 Hb_001519_210 0.2083007266 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
18 Hb_000614_270 0.2175040241 - - -
19 Hb_002482_050 0.2240066301 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
20 Hb_005742_010 0.2321631171 - - hypothetical protein, partial [Pseudomonas fluorescens]

Gene co-expression network

sample Hb_154997_010 Hb_154997_010 Hb_006933_010 Hb_006933_010 Hb_154997_010--Hb_006933_010 Hb_002495_050 Hb_002495_050 Hb_154997_010--Hb_002495_050 Hb_001124_170 Hb_001124_170 Hb_154997_010--Hb_001124_170 Hb_002869_070 Hb_002869_070 Hb_154997_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_154997_010--Hb_004124_010 Hb_159938_010 Hb_159938_010 Hb_154997_010--Hb_159938_010 Hb_006933_010--Hb_004124_010 Hb_006933_010--Hb_002495_050 Hb_006933_010--Hb_001124_170 Hb_006933_010--Hb_002869_070 Hb_170973_010 Hb_170973_010 Hb_006933_010--Hb_170973_010 Hb_002495_050--Hb_001124_170 Hb_021374_020 Hb_021374_020 Hb_002495_050--Hb_021374_020 Hb_002495_050--Hb_004124_010 Hb_002495_050--Hb_170973_010 Hb_001124_170--Hb_021374_020 Hb_001124_170--Hb_004124_010 Hb_001124_170--Hb_170973_010 Hb_050334_010 Hb_050334_010 Hb_002869_070--Hb_050334_010 Hb_002869_070--Hb_004124_010 Hb_002473_140 Hb_002473_140 Hb_002869_070--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002869_070--Hb_006157_050 Hb_009268_030 Hb_009268_030 Hb_004124_010--Hb_009268_030 Hb_004124_010--Hb_170973_010 Hb_141425_010 Hb_141425_010 Hb_004124_010--Hb_141425_010 Hb_043792_020 Hb_043792_020 Hb_159938_010--Hb_043792_020 Hb_159938_010--Hb_002473_140 Hb_159938_010--Hb_002869_070 Hb_001519_210 Hb_001519_210 Hb_159938_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_159938_010--Hb_088410_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.112464 0.0512318 0.498656

CAGE analysis