Hb_155092_010

Information

Type -
Description -
Location Contig155092: 1033-4378
Sequence    

Annotation

kegg
ID pop:POPTR_0018s00650g
description POPTRDRAFT_578124; CCR4-NOT transcription complex family protein
nr
ID XP_012065994.1
description PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
swissprot
ID O64773
description Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1
trembl
ID A0A067L7E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26681 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155092_010 0.0 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
2 Hb_009954_050 0.1879221742 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
3 Hb_001140_240 0.2330898847 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_005725_100 0.2516540792 - - hypothetical protein 30 [Hevea brasiliensis]
5 Hb_004128_040 0.2517362565 - - -
6 Hb_000500_210 0.2566493238 - - -
7 Hb_000239_110 0.2665229843 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
8 Hb_000613_170 0.270788266 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
9 Hb_000395_060 0.2781744471 - - -
10 Hb_005408_040 0.2800102418 - - -
11 Hb_004429_110 0.2801669971 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
12 Hb_001017_080 0.2803632354 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
13 Hb_129204_010 0.2806178891 - - LOC100284182 [Zea mays]
14 Hb_002260_160 0.2848616117 - - conserved hypothetical protein [Ricinus communis]
15 Hb_156503_040 0.2898585233 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
16 Hb_182005_010 0.2937615676 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
17 Hb_000853_130 0.2945061063 - - PREDICTED: probable ATP-dependent RNA helicase DHX37 [Jatropha curcas]
18 Hb_007451_060 0.2962626115 - - BAHD family acyltransferase, clade V, putative [Theobroma cacao]
19 Hb_002232_470 0.2966695586 - - conserved hypothetical protein [Ricinus communis]
20 Hb_183612_080 0.2969596054 - - hypothetical protein POPTR_0001s00500g [Populus trichocarpa]

Gene co-expression network

sample Hb_155092_010 Hb_155092_010 Hb_009954_050 Hb_009954_050 Hb_155092_010--Hb_009954_050 Hb_001140_240 Hb_001140_240 Hb_155092_010--Hb_001140_240 Hb_005725_100 Hb_005725_100 Hb_155092_010--Hb_005725_100 Hb_004128_040 Hb_004128_040 Hb_155092_010--Hb_004128_040 Hb_000500_210 Hb_000500_210 Hb_155092_010--Hb_000500_210 Hb_000239_110 Hb_000239_110 Hb_155092_010--Hb_000239_110 Hb_009954_050--Hb_001140_240 Hb_000395_060 Hb_000395_060 Hb_009954_050--Hb_000395_060 Hb_001348_110 Hb_001348_110 Hb_009954_050--Hb_001348_110 Hb_001520_020 Hb_001520_020 Hb_009954_050--Hb_001520_020 Hb_000011_340 Hb_000011_340 Hb_009954_050--Hb_000011_340 Hb_001140_240--Hb_000500_210 Hb_000804_030 Hb_000804_030 Hb_001140_240--Hb_000804_030 Hb_002260_160 Hb_002260_160 Hb_001140_240--Hb_002260_160 Hb_000012_070 Hb_000012_070 Hb_001140_240--Hb_000012_070 Hb_001140_240--Hb_005725_100 Hb_004429_110 Hb_004429_110 Hb_005725_100--Hb_004429_110 Hb_005725_100--Hb_000239_110 Hb_183612_080 Hb_183612_080 Hb_005725_100--Hb_183612_080 Hb_001266_030 Hb_001266_030 Hb_005725_100--Hb_001266_030 Hb_000879_210 Hb_000879_210 Hb_005725_100--Hb_000879_210 Hb_000617_110 Hb_000617_110 Hb_005725_100--Hb_000617_110 Hb_003502_100 Hb_003502_100 Hb_004128_040--Hb_003502_100 Hb_005245_070 Hb_005245_070 Hb_004128_040--Hb_005245_070 Hb_004128_040--Hb_004429_110 Hb_021056_010 Hb_021056_010 Hb_004128_040--Hb_021056_010 Hb_021924_010 Hb_021924_010 Hb_004128_040--Hb_021924_010 Hb_002232_470 Hb_002232_470 Hb_004128_040--Hb_002232_470 Hb_011224_040 Hb_011224_040 Hb_000500_210--Hb_011224_040 Hb_000500_210--Hb_004429_110 Hb_000454_180 Hb_000454_180 Hb_000500_210--Hb_000454_180 Hb_008887_040 Hb_008887_040 Hb_000500_210--Hb_008887_040 Hb_007943_140 Hb_007943_140 Hb_000500_210--Hb_007943_140 Hb_004755_030 Hb_004755_030 Hb_000500_210--Hb_004755_030 Hb_003398_020 Hb_003398_020 Hb_000239_110--Hb_003398_020 Hb_042871_010 Hb_042871_010 Hb_000239_110--Hb_042871_010 Hb_003376_380 Hb_003376_380 Hb_000239_110--Hb_003376_380 Hb_000239_110--Hb_004429_110 Hb_000239_110--Hb_000500_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0468856 0.0398743 0 0.0533389 0 0.0735431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.327266 0.600075 0 0.176348 0

CAGE analysis