Hb_155159_010

Information

Type -
Description -
Location Contig155159: 20923-30028
Sequence    

Annotation

kegg
ID rcu:RCOM_0935770
description double-stranded RNA binding protein, putative
nr
ID XP_012091568.1
description PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
swissprot
ID Q5YDB6
description RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1
trembl
ID A0A067JAV3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21412 PE=4 SV=1
Gene Ontology
ID GO:0004647
description rna polymerase ii c-terminal domain phosphatase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13461: 20855-21281 , PASA_asmbl_13462: 29515-30015
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155159_010 0.0 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
2 Hb_002282_060 0.0445369093 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
3 Hb_011920_020 0.0587633906 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
4 Hb_007283_030 0.0610245616 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
5 Hb_000703_130 0.0648237891 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
6 Hb_001231_090 0.0676626796 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
7 Hb_010661_020 0.0687380552 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
8 Hb_007818_030 0.0696804879 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
9 Hb_001221_090 0.0698034568 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
10 Hb_007576_220 0.0730416797 - - PREDICTED: kanadaptin [Jatropha curcas]
11 Hb_001534_210 0.0739865409 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
12 Hb_005214_150 0.0740816722 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
13 Hb_011202_030 0.0753670733 - - arsenite-resistance protein, putative [Ricinus communis]
14 Hb_002073_280 0.0757101025 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
15 Hb_004032_230 0.0772127965 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
16 Hb_009449_090 0.0784834766 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
17 Hb_000526_060 0.079396165 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
18 Hb_000117_070 0.0797607162 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
19 Hb_000086_050 0.0799965321 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
20 Hb_000896_060 0.0809425994 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_155159_010 Hb_155159_010 Hb_002282_060 Hb_002282_060 Hb_155159_010--Hb_002282_060 Hb_011920_020 Hb_011920_020 Hb_155159_010--Hb_011920_020 Hb_007283_030 Hb_007283_030 Hb_155159_010--Hb_007283_030 Hb_000703_130 Hb_000703_130 Hb_155159_010--Hb_000703_130 Hb_001231_090 Hb_001231_090 Hb_155159_010--Hb_001231_090 Hb_010661_020 Hb_010661_020 Hb_155159_010--Hb_010661_020 Hb_002282_060--Hb_001231_090 Hb_002073_280 Hb_002073_280 Hb_002282_060--Hb_002073_280 Hb_002282_060--Hb_010661_020 Hb_002542_130 Hb_002542_130 Hb_002282_060--Hb_002542_130 Hb_002282_060--Hb_000703_130 Hb_001674_040 Hb_001674_040 Hb_011920_020--Hb_001674_040 Hb_001221_090 Hb_001221_090 Hb_011920_020--Hb_001221_090 Hb_011920_020--Hb_010661_020 Hb_096819_010 Hb_096819_010 Hb_011920_020--Hb_096819_010 Hb_002092_070 Hb_002092_070 Hb_011920_020--Hb_002092_070 Hb_007818_040 Hb_007818_040 Hb_007283_030--Hb_007818_040 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_000086_050 Hb_000086_050 Hb_007283_030--Hb_000086_050 Hb_007576_230 Hb_007576_230 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_009476_090 Hb_009476_090 Hb_000703_130--Hb_009476_090 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_001231_090--Hb_002542_130 Hb_004976_010 Hb_004976_010 Hb_001231_090--Hb_004976_010 Hb_001534_210 Hb_001534_210 Hb_001231_090--Hb_001534_210 Hb_004032_230 Hb_004032_230 Hb_001231_090--Hb_004032_230 Hb_005523_020 Hb_005523_020 Hb_001231_090--Hb_005523_020 Hb_005542_050 Hb_005542_050 Hb_010661_020--Hb_005542_050 Hb_000926_010 Hb_000926_010 Hb_010661_020--Hb_000926_010 Hb_010661_020--Hb_001231_090 Hb_005539_040 Hb_005539_040 Hb_010661_020--Hb_005539_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.815 18.4916 9.84734 6.08897 8.64595 9.53871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.70608 3.10386 3.59282 8.18929 8.55322

CAGE analysis