Hb_155159_020

Information

Type -
Description -
Location Contig155159: 30898-32868
Sequence    

Annotation

kegg
ID tcc:TCM_029908
description Clathrin light chain protein isoform 1
nr
ID XP_012091570.1
description PREDICTED: clathrin light chain 1-like [Jatropha curcas]
swissprot
ID Q9SKU1
description Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1
trembl
ID A0A067JAZ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21413 PE=4 SV=1
Gene Ontology
ID GO:0030130
description clathrin light chain 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13462: 29515-30015 , PASA_asmbl_13464: 30848-32896
cDNA
(Sanger)
(ID:Location)		 053_H03.ab1: 30851-32322

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155159_020 0.0 - - PREDICTED: clathrin light chain 1-like [Jatropha curcas]
2 Hb_001159_130 0.0540599797 - - PREDICTED: protein cornichon homolog 4 [Jatropha curcas]
3 Hb_022115_020 0.0599763005 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11 isoform X2 [Jatropha curcas]
4 Hb_084646_010 0.0605509609 - - hypothetical protein CICLE_v10031746mg [Citrus clementina]
5 Hb_000116_270 0.0692684905 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
6 Hb_000603_150 0.0697135334 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
7 Hb_000787_020 0.0703651243 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000645_090 0.0742098191 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002481_080 0.0754707612 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
10 Hb_028227_070 0.0771527179 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_004738_100 0.0777115156 - - PREDICTED: 14-3-3-like protein D-like isoform X1 [Citrus sinensis]
12 Hb_092337_010 0.0788397355 - - PREDICTED: actin-depolymerizing factor 2-like [Nelumbo nucifera]
13 Hb_001584_120 0.0789972163 - - PREDICTED: probable Xaa-Pro aminopeptidase 3 [Jatropha curcas]
14 Hb_001511_060 0.0798065504 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
15 Hb_027380_130 0.0798112932 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 23 isoform X2 [Jatropha curcas]
16 Hb_000580_180 0.0800721398 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000120_670 0.0800788197 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
18 Hb_000477_060 0.0806112522 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
19 Hb_010128_080 0.0807358738 - - PREDICTED: pentatricopeptide repeat-containing protein At1g63330-like isoform X1 [Jatropha curcas]
20 Hb_003177_030 0.0809720184 - - PREDICTED: uncharacterized protein LOC105635357 [Jatropha curcas]

Gene co-expression network

sample Hb_155159_020 Hb_155159_020 Hb_001159_130 Hb_001159_130 Hb_155159_020--Hb_001159_130 Hb_022115_020 Hb_022115_020 Hb_155159_020--Hb_022115_020 Hb_084646_010 Hb_084646_010 Hb_155159_020--Hb_084646_010 Hb_000116_270 Hb_000116_270 Hb_155159_020--Hb_000116_270 Hb_000603_150 Hb_000603_150 Hb_155159_020--Hb_000603_150 Hb_000787_020 Hb_000787_020 Hb_155159_020--Hb_000787_020 Hb_001159_130--Hb_000116_270 Hb_003177_030 Hb_003177_030 Hb_001159_130--Hb_003177_030 Hb_001159_130--Hb_000603_150 Hb_000200_020 Hb_000200_020 Hb_001159_130--Hb_000200_020 Hb_000019_030 Hb_000019_030 Hb_001159_130--Hb_000019_030 Hb_001511_060 Hb_001511_060 Hb_022115_020--Hb_001511_060 Hb_002110_190 Hb_002110_190 Hb_022115_020--Hb_002110_190 Hb_002809_050 Hb_002809_050 Hb_022115_020--Hb_002809_050 Hb_000028_180 Hb_000028_180 Hb_022115_020--Hb_000028_180 Hb_022115_020--Hb_000603_150 Hb_084646_010--Hb_000116_270 Hb_001016_120 Hb_001016_120 Hb_084646_010--Hb_001016_120 Hb_084646_010--Hb_000787_020 Hb_027380_130 Hb_027380_130 Hb_084646_010--Hb_027380_130 Hb_084646_010--Hb_001159_130 Hb_000116_270--Hb_001016_120 Hb_000116_270--Hb_000200_020 Hb_006478_020 Hb_006478_020 Hb_000116_270--Hb_006478_020 Hb_000477_060 Hb_000477_060 Hb_000116_270--Hb_000477_060 Hb_006455_120 Hb_006455_120 Hb_000603_150--Hb_006455_120 Hb_000205_300 Hb_000205_300 Hb_000603_150--Hb_000205_300 Hb_000120_670 Hb_000120_670 Hb_000603_150--Hb_000120_670 Hb_000580_180 Hb_000580_180 Hb_000603_150--Hb_000580_180 Hb_003549_150 Hb_003549_150 Hb_000603_150--Hb_003549_150 Hb_000890_150 Hb_000890_150 Hb_000787_020--Hb_000890_150 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_000049_210 Hb_000049_210 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.339 77.5201 62.4336 145.576 85.7757 103.232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.261 122.535 149.899 119.09 56.9057

CAGE analysis