Hb_155159_030

Information

Type -
Description -
Location Contig155159: 44368-49018
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04030g
description POPTRDRAFT_197301; hypothetical protein
nr
ID XP_012091571.1
description PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
swissprot
ID C0LGH2
description Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=2 SV=2
trembl
ID A0A067JDV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21414 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13465: 44424-46323 , PASA_asmbl_13466: 46364-49075 , PASA_asmbl_13467: 46364-48617
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155159_030 0.0 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
2 Hb_127552_030 0.0483125034 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_105123_010 0.0507209698 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
4 Hb_015934_070 0.0689699276 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
5 Hb_032258_030 0.073794294 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647563 [Jatropha curcas]
6 Hb_025240_040 0.0738568321 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
7 Hb_001579_220 0.0776788273 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
8 Hb_012098_080 0.079874352 - - KOM, putative [Ricinus communis]
9 Hb_001545_080 0.0812138098 - - PREDICTED: tRNA pseudouridine(38/39) synthase isoform X3 [Jatropha curcas]
10 Hb_000092_170 0.0819135726 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
11 Hb_001006_190 0.0850048843 - - PREDICTED: uncharacterized protein LOC105634201 [Jatropha curcas]
12 Hb_001009_170 0.0862365494 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
13 Hb_001959_210 0.0876309833 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
14 Hb_108350_010 0.0891770815 - - GTP-binding protein erg, putative [Ricinus communis]
15 Hb_002183_060 0.0897864052 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
16 Hb_003688_150 0.0903788926 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_000976_170 0.0905608261 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
18 Hb_000421_220 0.0905981723 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
19 Hb_004218_110 0.0911079166 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
20 Hb_004254_120 0.0912858491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_155159_030 Hb_155159_030 Hb_127552_030 Hb_127552_030 Hb_155159_030--Hb_127552_030 Hb_105123_010 Hb_105123_010 Hb_155159_030--Hb_105123_010 Hb_015934_070 Hb_015934_070 Hb_155159_030--Hb_015934_070 Hb_032258_030 Hb_032258_030 Hb_155159_030--Hb_032258_030 Hb_025240_040 Hb_025240_040 Hb_155159_030--Hb_025240_040 Hb_001579_220 Hb_001579_220 Hb_155159_030--Hb_001579_220 Hb_127552_030--Hb_015934_070 Hb_127552_030--Hb_025240_040 Hb_000976_170 Hb_000976_170 Hb_127552_030--Hb_000976_170 Hb_127552_030--Hb_105123_010 Hb_108350_010 Hb_108350_010 Hb_127552_030--Hb_108350_010 Hb_012098_080 Hb_012098_080 Hb_105123_010--Hb_012098_080 Hb_105123_010--Hb_032258_030 Hb_000861_020 Hb_000861_020 Hb_105123_010--Hb_000861_020 Hb_022693_060 Hb_022693_060 Hb_105123_010--Hb_022693_060 Hb_031862_100 Hb_031862_100 Hb_015934_070--Hb_031862_100 Hb_015934_070--Hb_025240_040 Hb_006907_130 Hb_006907_130 Hb_015934_070--Hb_006907_130 Hb_007017_030 Hb_007017_030 Hb_015934_070--Hb_007017_030 Hb_001369_690 Hb_001369_690 Hb_015934_070--Hb_001369_690 Hb_008648_010 Hb_008648_010 Hb_032258_030--Hb_008648_010 Hb_004097_050 Hb_004097_050 Hb_032258_030--Hb_004097_050 Hb_009658_020 Hb_009658_020 Hb_032258_030--Hb_009658_020 Hb_005306_170 Hb_005306_170 Hb_032258_030--Hb_005306_170 Hb_004218_110 Hb_004218_110 Hb_025240_040--Hb_004218_110 Hb_004254_120 Hb_004254_120 Hb_025240_040--Hb_004254_120 Hb_002759_060 Hb_002759_060 Hb_025240_040--Hb_002759_060 Hb_000421_220 Hb_000421_220 Hb_025240_040--Hb_000421_220 Hb_000329_470 Hb_000329_470 Hb_001579_220--Hb_000329_470 Hb_003050_220 Hb_003050_220 Hb_001579_220--Hb_003050_220 Hb_000015_040 Hb_000015_040 Hb_001579_220--Hb_000015_040 Hb_000220_220 Hb_000220_220 Hb_001579_220--Hb_000220_220 Hb_000680_160 Hb_000680_160 Hb_001579_220--Hb_000680_160 Hb_012035_050 Hb_012035_050 Hb_001579_220--Hb_012035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.62615 3.71897 3.69502 4.55749 7.03774 10.0444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.9575 11.2701 8.88324 9.25643 9.0932

CAGE analysis