Hb_155215_020

Information

Type -
Description -
Location Contig155215: 8329-9767
Sequence    

Annotation

kegg
ID pop:POPTR_0011s16880g
description hypothetical protein
nr
ID XP_011000336.1
description PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
swissprot
ID Q9VR89
description RNA-binding protein pno1 OS=Drosophila melanogaster GN=l(1)G0004 PE=2 SV=1
trembl
ID U5G067
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s16880g PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding protein pno1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13480: 8311-9856 , PASA_asmbl_13481: 9351-9493
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155215_020 0.0 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]
2 Hb_032202_100 0.075398351 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
3 Hb_002572_020 0.0831486445 transcription factor TF Family: SBP hypothetical protein POPTR_0005s28010g [Populus trichocarpa]
4 Hb_000086_170 0.0912144851 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
5 Hb_000270_310 0.092450234 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
6 Hb_004607_090 0.094256948 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
7 Hb_000840_200 0.0959333225 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
8 Hb_003647_140 0.0986327621 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
9 Hb_000365_230 0.0989851044 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
10 Hb_002534_100 0.099866376 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
11 Hb_000373_050 0.1019049834 - - PREDICTED: protein WHI3 [Jatropha curcas]
12 Hb_000292_100 0.1021292513 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
13 Hb_002303_020 0.1021738732 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
14 Hb_003929_070 0.1022030875 - - CBL-interacting serine/threonine-protein kinase 1 isoform 3 [Theobroma cacao]
15 Hb_171900_090 0.1022988601 - - conserved hypothetical protein [Ricinus communis]
16 Hb_062226_130 0.1028467144 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
17 Hb_000731_200 0.1035570365 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
18 Hb_002157_120 0.1050647076 - - conserved hypothetical protein [Ricinus communis]
19 Hb_008225_090 0.1050828138 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
20 Hb_000130_270 0.1052378468 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_155215_020 Hb_155215_020 Hb_032202_100 Hb_032202_100 Hb_155215_020--Hb_032202_100 Hb_002572_020 Hb_002572_020 Hb_155215_020--Hb_002572_020 Hb_000086_170 Hb_000086_170 Hb_155215_020--Hb_000086_170 Hb_000270_310 Hb_000270_310 Hb_155215_020--Hb_000270_310 Hb_004607_090 Hb_004607_090 Hb_155215_020--Hb_004607_090 Hb_000840_200 Hb_000840_200 Hb_155215_020--Hb_000840_200 Hb_000130_270 Hb_000130_270 Hb_032202_100--Hb_000130_270 Hb_000926_200 Hb_000926_200 Hb_032202_100--Hb_000926_200 Hb_000035_160 Hb_000035_160 Hb_032202_100--Hb_000035_160 Hb_000946_090 Hb_000946_090 Hb_032202_100--Hb_000946_090 Hb_161574_020 Hb_161574_020 Hb_032202_100--Hb_161574_020 Hb_000603_160 Hb_000603_160 Hb_002572_020--Hb_000603_160 Hb_002316_140 Hb_002316_140 Hb_002572_020--Hb_002316_140 Hb_002413_010 Hb_002413_010 Hb_002572_020--Hb_002413_010 Hb_000365_230 Hb_000365_230 Hb_002572_020--Hb_000365_230 Hb_000173_310 Hb_000173_310 Hb_002572_020--Hb_000173_310 Hb_183433_010 Hb_183433_010 Hb_002572_020--Hb_183433_010 Hb_000086_170--Hb_000270_310 Hb_004312_010 Hb_004312_010 Hb_000086_170--Hb_004312_010 Hb_000086_170--Hb_161574_020 Hb_014720_120 Hb_014720_120 Hb_000086_170--Hb_014720_120 Hb_000336_210 Hb_000336_210 Hb_000086_170--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000086_170--Hb_002272_050 Hb_000270_310--Hb_161574_020 Hb_001278_100 Hb_001278_100 Hb_000270_310--Hb_001278_100 Hb_002936_010 Hb_002936_010 Hb_000270_310--Hb_002936_010 Hb_164010_040 Hb_164010_040 Hb_000270_310--Hb_164010_040 Hb_007878_010 Hb_007878_010 Hb_000270_310--Hb_007878_010 Hb_000983_050 Hb_000983_050 Hb_004607_090--Hb_000983_050 Hb_007472_070 Hb_007472_070 Hb_004607_090--Hb_007472_070 Hb_004607_090--Hb_000603_160 Hb_000087_070 Hb_000087_070 Hb_004607_090--Hb_000087_070 Hb_000300_270 Hb_000300_270 Hb_004607_090--Hb_000300_270 Hb_005162_090 Hb_005162_090 Hb_004607_090--Hb_005162_090 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000069_720 Hb_000069_720 Hb_000840_200--Hb_000069_720 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89085 8.58133 13.2441 14.3765 5.81428 6.852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.20744 15.3685 5.42292 6.5445 10.3295

CAGE analysis