Hb_155375_010

Information

Type -
Description -
Location Contig155375: 192-1064
Sequence    

Annotation

kegg
ID rcu:RCOM_1430310
description pentatricopeptide repeat-containing protein, putative
nr
ID KDP23555.1
description hypothetical protein JCGZ_23388 [Jatropha curcas]
swissprot
ID Q9VCX3
description Probable 39S ribosomal protein L45, mitochondrial OS=Drosophila melanogaster GN=mRpL45 PE=2 SV=1
trembl
ID A0A067JU85
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23388 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155375_010 0.0 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
2 Hb_000510_090 0.0864073215 - - 40S ribosomal protein S15 [Morus notabilis]
3 Hb_001976_050 0.0953602577 - - PREDICTED: protein SKIP34 [Jatropha curcas]
4 Hb_002217_310 0.1105448375 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
5 Hb_000243_280 0.1115621851 - - -
6 Hb_000749_150 0.1137934165 - - -
7 Hb_000620_080 0.116213484 - - hypothetical protein F775_32679 [Aegilops tauschii]
8 Hb_141131_010 0.1167100081 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
9 Hb_000347_340 0.1191039948 - - ring finger, putative [Ricinus communis]
10 Hb_000103_140 0.1227318838 - - ribosomal protein S3a [Populus trichocarpa]
11 Hb_004944_010 0.1236065402 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
12 Hb_034585_030 0.1257469395 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
13 Hb_000080_060 0.1275884834 - - RNA polymerase I, II and III subunit RPB8, partial [Manihot esculenta]
14 Hb_000442_160 0.1296753931 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
15 Hb_000204_040 0.1298189917 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
16 Hb_009543_030 0.1300137695 - - prefoldin subunit 1 [Jatropha curcas]
17 Hb_003919_010 0.1301400149 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000349_060 0.1306270197 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_004204_200 0.1311121347 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
20 Hb_000032_540 0.1340765231 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_155375_010 Hb_155375_010 Hb_000510_090 Hb_000510_090 Hb_155375_010--Hb_000510_090 Hb_001976_050 Hb_001976_050 Hb_155375_010--Hb_001976_050 Hb_002217_310 Hb_002217_310 Hb_155375_010--Hb_002217_310 Hb_000243_280 Hb_000243_280 Hb_155375_010--Hb_000243_280 Hb_000749_150 Hb_000749_150 Hb_155375_010--Hb_000749_150 Hb_000620_080 Hb_000620_080 Hb_155375_010--Hb_000620_080 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_000069_160 Hb_000069_160 Hb_002217_310--Hb_000069_160 Hb_002217_310--Hb_141131_010 Hb_000849_070 Hb_000849_070 Hb_002217_310--Hb_000849_070 Hb_001124_210 Hb_001124_210 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_003847_080 Hb_003847_080 Hb_002217_310--Hb_003847_080 Hb_003747_040 Hb_003747_040 Hb_000243_280--Hb_003747_040 Hb_000243_280--Hb_000510_090 Hb_000347_340 Hb_000347_340 Hb_000243_280--Hb_000347_340 Hb_000243_280--Hb_001976_050 Hb_000094_020 Hb_000094_020 Hb_000243_280--Hb_000094_020 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000803_150 Hb_000803_150 Hb_000749_150--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000749_150--Hb_000165_030 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_000620_080--Hb_141131_010 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.0591 11.4366 8.09379 22.3623 21.138 75.5001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6138 39.8155 24.0658 14.1088 2.28297

CAGE analysis