Hb_155396_010

Information

Type -
Description -
Location Contig155396: 3314-8671
Sequence    

Annotation

kegg
ID rcu:RCOM_1045150
description TMV resistance protein N, putative
nr
ID XP_002523474.1
description TMV resistance protein N, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SBV5
description TMV resistance protein N, putative OS=Ricinus communis GN=RCOM_1045150 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155396_010 0.0 - - TMV resistance protein N, putative [Ricinus communis]
2 Hb_003373_040 0.0824350382 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
3 Hb_004109_030 0.0941952047 - - conserved hypothetical protein [Ricinus communis]
4 Hb_116086_010 0.0954325452 - - hypothetical protein JCGZ_14829 [Jatropha curcas]
5 Hb_005725_060 0.0975702161 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
6 Hb_001864_060 0.0989233549 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
7 Hb_003175_030 0.099545072 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
8 Hb_000832_030 0.1014480404 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
9 Hb_006198_020 0.1017639903 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]
10 Hb_093084_070 0.1022000733 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
11 Hb_000780_170 0.1049378378 - - PREDICTED: OBERON-like protein [Jatropha curcas]
12 Hb_004597_010 0.1059765445 transcription factor TF Family: bHLH PREDICTED: transcription factor MYC2 [Jatropha curcas]
13 Hb_003411_110 0.1081258822 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
14 Hb_000061_490 0.1083991069 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
15 Hb_007894_130 0.1099058229 - - hypothetical protein RCOM_0584960 [Ricinus communis]
16 Hb_003752_100 0.1106857617 - - PREDICTED: FRIGIDA-like protein 3 [Jatropha curcas]
17 Hb_009771_100 0.1134289171 - - PREDICTED: uncharacterized protein LOC105141784 [Populus euphratica]
18 Hb_007850_090 0.1138536945 - - PREDICTED: probable galacturonosyltransferase 11 isoform X1 [Jatropha curcas]
19 Hb_002046_020 0.1143530205 - - PREDICTED: putative clathrin assembly protein At2g25430 [Jatropha curcas]
20 Hb_000140_070 0.1153329027 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_155396_010 Hb_155396_010 Hb_003373_040 Hb_003373_040 Hb_155396_010--Hb_003373_040 Hb_004109_030 Hb_004109_030 Hb_155396_010--Hb_004109_030 Hb_116086_010 Hb_116086_010 Hb_155396_010--Hb_116086_010 Hb_005725_060 Hb_005725_060 Hb_155396_010--Hb_005725_060 Hb_001864_060 Hb_001864_060 Hb_155396_010--Hb_001864_060 Hb_003175_030 Hb_003175_030 Hb_155396_010--Hb_003175_030 Hb_093084_070 Hb_093084_070 Hb_003373_040--Hb_093084_070 Hb_000236_220 Hb_000236_220 Hb_003373_040--Hb_000236_220 Hb_003373_040--Hb_004109_030 Hb_000070_080 Hb_000070_080 Hb_003373_040--Hb_000070_080 Hb_008103_060 Hb_008103_060 Hb_003373_040--Hb_008103_060 Hb_002078_220 Hb_002078_220 Hb_003373_040--Hb_002078_220 Hb_008511_090 Hb_008511_090 Hb_004109_030--Hb_008511_090 Hb_003082_010 Hb_003082_010 Hb_004109_030--Hb_003082_010 Hb_002890_090 Hb_002890_090 Hb_004109_030--Hb_002890_090 Hb_004109_030--Hb_000070_080 Hb_000941_130 Hb_000941_130 Hb_004109_030--Hb_000941_130 Hb_001123_290 Hb_001123_290 Hb_116086_010--Hb_001123_290 Hb_000832_030 Hb_000832_030 Hb_116086_010--Hb_000832_030 Hb_116086_010--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_116086_010--Hb_002005_110 Hb_003411_110 Hb_003411_110 Hb_116086_010--Hb_003411_110 Hb_005096_010 Hb_005096_010 Hb_005725_060--Hb_005096_010 Hb_006198_020 Hb_006198_020 Hb_005725_060--Hb_006198_020 Hb_000134_340 Hb_000134_340 Hb_005725_060--Hb_000134_340 Hb_007894_130 Hb_007894_130 Hb_005725_060--Hb_007894_130 Hb_004218_090 Hb_004218_090 Hb_005725_060--Hb_004218_090 Hb_001864_060--Hb_004109_030 Hb_001864_060--Hb_008511_090 Hb_003752_100 Hb_003752_100 Hb_001864_060--Hb_003752_100 Hb_001828_130 Hb_001828_130 Hb_001864_060--Hb_001828_130 Hb_000025_330 Hb_000025_330 Hb_001864_060--Hb_000025_330 Hb_010381_030 Hb_010381_030 Hb_003175_030--Hb_010381_030 Hb_000886_050 Hb_000886_050 Hb_003175_030--Hb_000886_050 Hb_005389_160 Hb_005389_160 Hb_003175_030--Hb_005389_160 Hb_003175_030--Hb_002078_220 Hb_003175_030--Hb_003752_100 Hb_003398_080 Hb_003398_080 Hb_003175_030--Hb_003398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.9618 5.19232 1.58768 2.53925 1.86462 2.21944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.74561 1.22059 1.93366 1.29484 0.696094

CAGE analysis