Hb_155541_010

Information

Type -
Description -
Location Contig155541: 4346-4929
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155541_010 0.0 - - -
2 Hb_011485_090 0.1615499467 - - -
3 Hb_118228_010 0.1772272316 - - PREDICTED: pirin-like protein [Jatropha curcas]
4 Hb_005928_050 0.1898569954 - - glutathione reductase [Hevea brasiliensis]
5 Hb_000302_130 0.1904302063 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
6 Hb_010913_010 0.1954391829 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
7 Hb_006907_100 0.1960468384 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
8 Hb_000253_030 0.2050204036 - - hypothetical protein JCGZ_23039 [Jatropha curcas]
9 Hb_000743_030 0.211383404 - - NmrA-like negative transcriptional regulator family protein [Theobroma cacao]
10 Hb_074836_010 0.217663737 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000264_290 0.2207027303 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
12 Hb_000275_020 0.2301909896 - - PREDICTED: uncharacterized protein LOC105632656 [Jatropha curcas]
13 Hb_004846_100 0.2346313684 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
14 Hb_000363_330 0.2385787863 - - -
15 Hb_100105_010 0.239104574 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
16 Hb_012120_030 0.2416836301 - - -
17 Hb_014783_010 0.2425558721 - - cold-inducible RNA binding protein, putative [Ricinus communis]
18 Hb_001269_290 0.2459108247 - - PREDICTED: uncharacterized protein LOC103438859 [Malus domestica]
19 Hb_008667_040 0.2466296831 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
20 Hb_000099_230 0.247706501 - - PREDICTED: F-box protein SKIP19-like [Gossypium raimondii]

Gene co-expression network

sample Hb_155541_010 Hb_155541_010 Hb_011485_090 Hb_011485_090 Hb_155541_010--Hb_011485_090 Hb_118228_010 Hb_118228_010 Hb_155541_010--Hb_118228_010 Hb_005928_050 Hb_005928_050 Hb_155541_010--Hb_005928_050 Hb_000302_130 Hb_000302_130 Hb_155541_010--Hb_000302_130 Hb_010913_010 Hb_010913_010 Hb_155541_010--Hb_010913_010 Hb_006907_100 Hb_006907_100 Hb_155541_010--Hb_006907_100 Hb_011485_090--Hb_118228_010 Hb_000926_230 Hb_000926_230 Hb_011485_090--Hb_000926_230 Hb_011485_090--Hb_006907_100 Hb_011485_090--Hb_000302_130 Hb_089140_120 Hb_089140_120 Hb_011485_090--Hb_089140_120 Hb_001828_100 Hb_001828_100 Hb_118228_010--Hb_001828_100 Hb_074836_010 Hb_074836_010 Hb_118228_010--Hb_074836_010 Hb_118228_010--Hb_010913_010 Hb_000261_170 Hb_000261_170 Hb_118228_010--Hb_000261_170 Hb_005928_050--Hb_006907_100 Hb_000122_050 Hb_000122_050 Hb_005928_050--Hb_000122_050 Hb_005928_050--Hb_000302_130 Hb_001269_290 Hb_001269_290 Hb_005928_050--Hb_001269_290 Hb_005928_050--Hb_011485_090 Hb_000264_290 Hb_000264_290 Hb_000302_130--Hb_000264_290 Hb_000302_130--Hb_006907_100 Hb_100105_010 Hb_100105_010 Hb_000302_130--Hb_100105_010 Hb_000743_030 Hb_000743_030 Hb_000302_130--Hb_000743_030 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_010913_010--Hb_006907_100 Hb_000099_230 Hb_000099_230 Hb_010913_010--Hb_000099_230 Hb_010913_010--Hb_011485_090 Hb_004846_100 Hb_004846_100 Hb_010913_010--Hb_004846_100 Hb_006907_100--Hb_000743_030 Hb_005000_250 Hb_005000_250 Hb_006907_100--Hb_005000_250 Hb_006907_100--Hb_000122_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13254 1.67688 1.07266 3.57989 1.01538 0.799805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4855 2.44375 0 0.11138 0

CAGE analysis