Hb_155541_020

Information

Type -
Description -
Location Contig155541: 5391-6911
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155541_020 0.0 - - -
2 Hb_186647_010 0.1410604916 - - -
3 Hb_003740_040 0.1840585583 - - Ubiquitin carboxyl-terminal hydrolase isozyme L3, putative [Ricinus communis]
4 Hb_001357_030 0.1851371781 - - hypothetical protein F383_04880 [Gossypium arboreum]
5 Hb_000302_100 0.1863318406 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
6 Hb_007441_090 0.2009522241 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
7 Hb_066514_010 0.2049041157 - - hypothetical protein RCOM_0204720 [Ricinus communis]
8 Hb_011918_010 0.221278721 - - hypothetical protein glysoja_041948 [Glycine soja]
9 Hb_105660_010 0.2226611467 - - PREDICTED: potassium channel AKT6-like [Jatropha curcas]
10 Hb_001708_010 0.2331168653 - - PREDICTED: putative disease resistance protein At4g11170 [Malus domestica]
11 Hb_006642_030 0.2374515477 - - PREDICTED: germin-like protein subfamily 3 member 2 [Jatropha curcas]
12 Hb_007575_090 0.2418318408 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
13 Hb_049915_010 0.242416237 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
14 Hb_131684_010 0.2427154954 - - conserved hypothetical protein [Ricinus communis]
15 Hb_160405_010 0.2427562218 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_000291_160 0.2441404309 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
17 Hb_004125_070 0.2454935428 - - Glycolipid transfer protein, putative [Ricinus communis]
18 Hb_106688_010 0.2462324809 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
19 Hb_104169_010 0.2476449131 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_000099_190 0.2501529001 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]

Gene co-expression network

sample Hb_155541_020 Hb_155541_020 Hb_186647_010 Hb_186647_010 Hb_155541_020--Hb_186647_010 Hb_003740_040 Hb_003740_040 Hb_155541_020--Hb_003740_040 Hb_001357_030 Hb_001357_030 Hb_155541_020--Hb_001357_030 Hb_000302_100 Hb_000302_100 Hb_155541_020--Hb_000302_100 Hb_007441_090 Hb_007441_090 Hb_155541_020--Hb_007441_090 Hb_066514_010 Hb_066514_010 Hb_155541_020--Hb_066514_010 Hb_105660_010 Hb_105660_010 Hb_186647_010--Hb_105660_010 Hb_186647_010--Hb_001357_030 Hb_049915_010 Hb_049915_010 Hb_186647_010--Hb_049915_010 Hb_186647_010--Hb_000302_100 Hb_011918_010 Hb_011918_010 Hb_186647_010--Hb_011918_010 Hb_003740_040--Hb_007441_090 Hb_001708_010 Hb_001708_010 Hb_003740_040--Hb_001708_010 Hb_106688_010 Hb_106688_010 Hb_003740_040--Hb_106688_010 Hb_001059_140 Hb_001059_140 Hb_003740_040--Hb_001059_140 Hb_003740_040--Hb_066514_010 Hb_160405_010 Hb_160405_010 Hb_001357_030--Hb_160405_010 Hb_001357_030--Hb_000302_100 Hb_000733_090 Hb_000733_090 Hb_001357_030--Hb_000733_090 Hb_001016_040 Hb_001016_040 Hb_001357_030--Hb_001016_040 Hb_001357_030--Hb_105660_010 Hb_001357_030--Hb_049915_010 Hb_000302_100--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000302_100--Hb_002272_200 Hb_000302_100--Hb_160405_010 Hb_007575_090 Hb_007575_090 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_007441_090--Hb_106688_010 Hb_007441_090--Hb_066514_010 Hb_165402_010 Hb_165402_010 Hb_007441_090--Hb_165402_010 Hb_018691_010 Hb_018691_010 Hb_007441_090--Hb_018691_010 Hb_017159_010 Hb_017159_010 Hb_007441_090--Hb_017159_010 Hb_007441_090--Hb_001708_010 Hb_002900_100 Hb_002900_100 Hb_066514_010--Hb_002900_100 Hb_066514_010--Hb_011918_010 Hb_002490_030 Hb_002490_030 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.97986 23.6205 4.79981 73.8224 0.98943 12.1899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.64933 8.04353 2.8613 10.4478 1.45448

CAGE analysis