Hb_155556_010

Information

Type -
Description -
Location Contig155556: 1155-5090
Sequence    

Annotation

kegg
ID rcu:RCOM_0364940
description methylenetetrahydrofolate reductase, putative (EC:1.5.1.20)
nr
ID XP_010097461.1
description putative methylenetetrahydrofolate reductase [Morus notabilis]
swissprot
ID Q9SE60
description Methylenetetrahydrofolate reductase 1 OS=Arabidopsis thaliana GN=MTHFR1 PE=1 SV=1
trembl
ID W9R4J3
description Methylenetetrahydrofolate reductase OS=Morus notabilis GN=L484_024666 PE=3 SV=1
Gene Ontology
ID GO:0004489
description methylenetetrahydrofolate reductase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155556_010 0.0 - - putative methylenetetrahydrofolate reductase [Morus notabilis]
2 Hb_001780_010 0.0901320328 - - hypothetical protein CICLE_v10006597mg [Citrus clementina]
3 Hb_000920_070 0.129197988 - - -
4 Hb_012071_010 0.1564363256 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_012295_020 0.1626877005 - - PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris]
6 Hb_001524_020 0.1800209709 - - Pollen-specific protein C13 precursor, putative [Ricinus communis]
7 Hb_001519_210 0.1815521049 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
8 Hb_002092_040 0.1895307048 - - PREDICTED: protein YLS3 [Jatropha curcas]
9 Hb_188487_010 0.2003566182 - - hypothetical protein JCGZ_24382 [Jatropha curcas]
10 Hb_095835_010 0.2130294886 - - hypothetical protein JCGZ_23410 [Jatropha curcas]
11 Hb_043792_020 0.2171966035 - - Retrotransposon gag protein [Medicago truncatula]
12 Hb_010810_070 0.2223245575 - - serine/threonine kinase, putative [Ricinus communis]
13 Hb_005439_010 0.223308917 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
14 Hb_002774_010 0.2233115763 - - -
15 Hb_128531_010 0.2307600923 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_000764_040 0.2330641537 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
17 Hb_000065_050 0.2514538933 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_050334_010 0.2547103262 - - -
19 Hb_003197_060 0.2559304097 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
20 Hb_018609_030 0.2598786454 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_155556_010 Hb_155556_010 Hb_001780_010 Hb_001780_010 Hb_155556_010--Hb_001780_010 Hb_000920_070 Hb_000920_070 Hb_155556_010--Hb_000920_070 Hb_012071_010 Hb_012071_010 Hb_155556_010--Hb_012071_010 Hb_012295_020 Hb_012295_020 Hb_155556_010--Hb_012295_020 Hb_001524_020 Hb_001524_020 Hb_155556_010--Hb_001524_020 Hb_001519_210 Hb_001519_210 Hb_155556_010--Hb_001519_210 Hb_001780_010--Hb_001524_020 Hb_001780_010--Hb_000920_070 Hb_002774_010 Hb_002774_010 Hb_001780_010--Hb_002774_010 Hb_188487_010 Hb_188487_010 Hb_001780_010--Hb_188487_010 Hb_002092_040 Hb_002092_040 Hb_001780_010--Hb_002092_040 Hb_010810_070 Hb_010810_070 Hb_000920_070--Hb_010810_070 Hb_000920_070--Hb_001524_020 Hb_095835_010 Hb_095835_010 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_012071_010--Hb_012295_020 Hb_000065_050 Hb_000065_050 Hb_012071_010--Hb_000065_050 Hb_032531_010 Hb_032531_010 Hb_012071_010--Hb_032531_010 Hb_012071_010--Hb_001519_210 Hb_050334_010 Hb_050334_010 Hb_012071_010--Hb_050334_010 Hb_012295_020--Hb_000065_050 Hb_012295_020--Hb_032531_010 Hb_012295_020--Hb_001519_210 Hb_012295_020--Hb_050334_010 Hb_001524_020--Hb_002774_010 Hb_001524_020--Hb_188487_010 Hb_001524_020--Hb_010810_070 Hb_001519_210--Hb_050334_010 Hb_043792_020 Hb_043792_020 Hb_001519_210--Hb_043792_020 Hb_001519_210--Hb_032531_010 Hb_002869_070 Hb_002869_070 Hb_001519_210--Hb_002869_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.212828 0.489526 0.468631

CAGE analysis