Hb_155702_010

Information

Type -
Description -
Location Contig155702: 478-828
Sequence    

Annotation

kegg
ID mdm:103407765
description tetraspanin-3-like
nr
ID KHG00511.1
description Tetraspanin-5 [Gossypium arboreum]
swissprot
ID Q9M1E7
description Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1
trembl
ID A0A0B0MNJ2
description Tetraspanin-5 OS=Gossypium arboreum GN=F383_17893 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-3- partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155702_010 0.0 - - Tetraspanin-5 [Gossypium arboreum]
2 Hb_011465_030 0.0984342518 - - PREDICTED: B2 protein [Jatropha curcas]
3 Hb_017075_030 0.0994805264 - - helicase, putative [Ricinus communis]
4 Hb_002002_030 0.1047444612 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001769_010 0.1055449077 - - conserved hypothetical protein [Ricinus communis]
6 Hb_032202_240 0.1060106437 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
7 Hb_003106_150 0.1094076127 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
8 Hb_000086_580 0.1099164016 - - ring finger protein, putative [Ricinus communis]
9 Hb_004310_050 0.1112533796 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
10 Hb_004032_180 0.11201082 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
11 Hb_001946_300 0.1158055998 - - PREDICTED: F-box protein At-B [Jatropha curcas]
12 Hb_000813_100 0.1173190039 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
13 Hb_010128_090 0.1177860025 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]
14 Hb_000363_130 0.1179701828 - - PREDICTED: FRIGIDA-like protein 1 [Jatropha curcas]
15 Hb_000140_070 0.1186034574 - - PREDICTED: uncharacterized protein LOC105642935 isoform X1 [Jatropha curcas]
16 Hb_002849_080 0.1194468032 - - PREDICTED: mitogen-activated protein kinase homolog MMK2 [Jatropha curcas]
17 Hb_033883_060 0.1197590417 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
18 Hb_004920_130 0.1197950361 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
19 Hb_005946_170 0.120449769 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_001220_030 0.1206951158 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]

Gene co-expression network

sample Hb_155702_010 Hb_155702_010 Hb_011465_030 Hb_011465_030 Hb_155702_010--Hb_011465_030 Hb_017075_030 Hb_017075_030 Hb_155702_010--Hb_017075_030 Hb_002002_030 Hb_002002_030 Hb_155702_010--Hb_002002_030 Hb_001769_010 Hb_001769_010 Hb_155702_010--Hb_001769_010 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_000265_250 Hb_000265_250 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_000540_120 Hb_000540_120 Hb_011465_030--Hb_000540_120 Hb_033883_060 Hb_033883_060 Hb_017075_030--Hb_033883_060 Hb_000406_240 Hb_000406_240 Hb_017075_030--Hb_000406_240 Hb_017075_030--Hb_003106_150 Hb_031042_070 Hb_031042_070 Hb_017075_030--Hb_031042_070 Hb_017075_030--Hb_001946_300 Hb_003878_140 Hb_003878_140 Hb_017075_030--Hb_003878_140 Hb_005038_020 Hb_005038_020 Hb_002002_030--Hb_005038_020 Hb_004310_050 Hb_004310_050 Hb_002002_030--Hb_004310_050 Hb_002002_030--Hb_002849_080 Hb_002270_010 Hb_002270_010 Hb_002002_030--Hb_002270_010 Hb_010584_010 Hb_010584_010 Hb_002002_030--Hb_010584_010 Hb_010128_090 Hb_010128_090 Hb_001769_010--Hb_010128_090 Hb_000865_080 Hb_000865_080 Hb_001769_010--Hb_000865_080 Hb_023827_040 Hb_023827_040 Hb_001769_010--Hb_023827_040 Hb_001769_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_001769_010--Hb_000224_060 Hb_002977_010 Hb_002977_010 Hb_032202_240--Hb_002977_010 Hb_032202_240--Hb_001946_300 Hb_001616_050 Hb_001616_050 Hb_032202_240--Hb_001616_050 Hb_000331_160 Hb_000331_160 Hb_032202_240--Hb_000331_160 Hb_032202_240--Hb_017075_030 Hb_025477_060 Hb_025477_060 Hb_032202_240--Hb_025477_060 Hb_010128_070 Hb_010128_070 Hb_003106_150--Hb_010128_070 Hb_003106_150--Hb_002849_080 Hb_001157_180 Hb_001157_180 Hb_003106_150--Hb_001157_180 Hb_000504_160 Hb_000504_160 Hb_003106_150--Hb_000504_160 Hb_003106_150--Hb_010128_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
307.942 289.881 43.6598 105.883 186.498 209.577
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.308 51.0459 100.795 82.2312 43.0007

CAGE analysis