Hb_155764_020

Information

Type -
Description -
Location Contig155764: 2292-2779
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10500g
description POPTRDRAFT_665696; hypothetical protein
nr
ID KJB59648.1
description hypothetical protein B456_009G265500 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2S8S0
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G265500 PE=4 SV=1
Gene Ontology
ID GO:0009535
description zinc finger and btb domain-containing protein 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13509: 2409-2718
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155764_020 0.0 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
2 Hb_000563_240 0.0608253942 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
3 Hb_001248_080 0.0648105762 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
4 Hb_001268_140 0.0671479287 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000099_060 0.0707466521 - - hypothetical protein JCGZ_23948 [Jatropha curcas]
6 Hb_000134_330 0.0750595395 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
7 Hb_001300_270 0.0795136768 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
8 Hb_000264_090 0.0824735575 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
9 Hb_148930_010 0.0879372 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
10 Hb_004724_160 0.0896983041 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
11 Hb_000970_010 0.0900002516 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
12 Hb_008173_090 0.0901545964 - - glutathione peroxidase, putative [Ricinus communis]
13 Hb_002097_060 0.0918681257 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_003376_030 0.091945631 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
15 Hb_002182_060 0.0922484714 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
16 Hb_001269_270 0.0933727124 - - 60S ribosomal protein L27B [Hevea brasiliensis]
17 Hb_011311_010 0.0944951786 - - 60S ribosomal protein L27C [Hevea brasiliensis]
18 Hb_001998_050 0.0974403727 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
19 Hb_002925_030 0.0977524444 - - 40S ribosomal protein S16B [Hevea brasiliensis]
20 Hb_001045_080 0.098396968 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]

Gene co-expression network

sample Hb_155764_020 Hb_155764_020 Hb_000563_240 Hb_000563_240 Hb_155764_020--Hb_000563_240 Hb_001248_080 Hb_001248_080 Hb_155764_020--Hb_001248_080 Hb_001268_140 Hb_001268_140 Hb_155764_020--Hb_001268_140 Hb_000099_060 Hb_000099_060 Hb_155764_020--Hb_000099_060 Hb_000134_330 Hb_000134_330 Hb_155764_020--Hb_000134_330 Hb_001300_270 Hb_001300_270 Hb_155764_020--Hb_001300_270 Hb_000563_240--Hb_001248_080 Hb_000563_240--Hb_000099_060 Hb_007575_070 Hb_007575_070 Hb_000563_240--Hb_007575_070 Hb_011311_010 Hb_011311_010 Hb_000563_240--Hb_011311_010 Hb_000563_240--Hb_001268_140 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_148930_010 Hb_148930_010 Hb_001248_080--Hb_148930_010 Hb_004724_160 Hb_004724_160 Hb_001248_080--Hb_004724_160 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_001268_140--Hb_001300_270 Hb_001268_140--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001268_140--Hb_007944_040 Hb_001045_080 Hb_001045_080 Hb_001268_140--Hb_001045_080 Hb_001269_270 Hb_001269_270 Hb_001268_140--Hb_001269_270 Hb_000099_060--Hb_000134_330 Hb_002182_060 Hb_002182_060 Hb_000099_060--Hb_002182_060 Hb_008173_090 Hb_008173_090 Hb_000099_060--Hb_008173_090 Hb_000970_010 Hb_000970_010 Hb_000099_060--Hb_000970_010 Hb_000099_060--Hb_001269_270 Hb_000025_600 Hb_000025_600 Hb_000134_330--Hb_000025_600 Hb_002296_060 Hb_002296_060 Hb_000134_330--Hb_002296_060 Hb_000134_330--Hb_001300_270 Hb_000134_330--Hb_008173_090 Hb_001300_270--Hb_007944_040 Hb_001300_270--Hb_002296_060 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.1453 18.0598 15.2198 10.0986 21.8934 39.4992
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
70.7467 113.282 57.9472 24.8557 8.30684

CAGE analysis