Hb_155832_010

Information

Type -
Description -
Location Contig155832: 1-624
Sequence    

Annotation

kegg
ID rcu:RCOM_0851830
description Auxin-induced protein 5NG4, putative
nr
ID XP_002517375.1
description Auxin-induced protein 5NG4, putative [Ricinus communis]
swissprot
ID Q94JU2
description WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1
trembl
ID B9RUD0
description Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_0851830 PE=4 SV=1
Gene Ontology
ID GO:0016021
description wat1-related protein at3g28050-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155832_010 0.0 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
2 Hb_000529_180 0.1038293616 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
3 Hb_000099_160 0.1061625972 - - PREDICTED: potassium transporter 3 isoform X2 [Populus euphratica]
4 Hb_000046_540 0.1068953015 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
5 Hb_004108_060 0.1128416955 - - hypothetical protein JCGZ_21975 [Jatropha curcas]
6 Hb_002639_110 0.1141013831 - - hypothetical protein L484_011673 [Morus notabilis]
7 Hb_002078_340 0.1157219872 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
8 Hb_001936_090 0.1163224168 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
9 Hb_001427_040 0.1229391535 - - PREDICTED: uncharacterized protein LOC105637784 [Jatropha curcas]
10 Hb_165928_040 0.127463824 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
11 Hb_000635_060 0.1277802571 - - PREDICTED: uncharacterized protein LOC105644797 [Jatropha curcas]
12 Hb_000365_240 0.1281980265 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
13 Hb_005260_030 0.1286732614 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
14 Hb_001163_060 0.128721222 - - neutral/alkaline invertase [Manihot esculenta]
15 Hb_013749_050 0.1289471399 - - PREDICTED: uncharacterized protein LOC105647765 isoform X2 [Jatropha curcas]
16 Hb_000300_470 0.1292120287 - - PREDICTED: nucleolin-like [Jatropha curcas]
17 Hb_188281_040 0.1299506731 - - PREDICTED: transcription initiation factor TFIID subunit 12 [Jatropha curcas]
18 Hb_002025_250 0.1307776835 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 3 [Jatropha curcas]
19 Hb_010863_050 0.1308245517 - - OTU domain-containing protein 6B, putative [Ricinus communis]
20 Hb_008705_020 0.1308951251 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_155832_010 Hb_155832_010 Hb_000529_180 Hb_000529_180 Hb_155832_010--Hb_000529_180 Hb_000099_160 Hb_000099_160 Hb_155832_010--Hb_000099_160 Hb_000046_540 Hb_000046_540 Hb_155832_010--Hb_000046_540 Hb_004108_060 Hb_004108_060 Hb_155832_010--Hb_004108_060 Hb_002639_110 Hb_002639_110 Hb_155832_010--Hb_002639_110 Hb_002078_340 Hb_002078_340 Hb_155832_010--Hb_002078_340 Hb_002675_250 Hb_002675_250 Hb_000529_180--Hb_002675_250 Hb_010863_050 Hb_010863_050 Hb_000529_180--Hb_010863_050 Hb_008705_020 Hb_008705_020 Hb_000529_180--Hb_008705_020 Hb_000167_110 Hb_000167_110 Hb_000529_180--Hb_000167_110 Hb_001438_010 Hb_001438_010 Hb_000529_180--Hb_001438_010 Hb_000529_180--Hb_000046_540 Hb_188281_040 Hb_188281_040 Hb_000099_160--Hb_188281_040 Hb_001936_090 Hb_001936_090 Hb_000099_160--Hb_001936_090 Hb_000720_050 Hb_000720_050 Hb_000099_160--Hb_000720_050 Hb_001347_060 Hb_001347_060 Hb_000099_160--Hb_001347_060 Hb_010294_010 Hb_010294_010 Hb_000099_160--Hb_010294_010 Hb_007765_100 Hb_007765_100 Hb_000099_160--Hb_007765_100 Hb_000046_540--Hb_002078_340 Hb_002025_250 Hb_002025_250 Hb_000046_540--Hb_002025_250 Hb_000078_140 Hb_000078_140 Hb_000046_540--Hb_000078_140 Hb_001195_400 Hb_001195_400 Hb_000046_540--Hb_001195_400 Hb_002769_030 Hb_002769_030 Hb_000046_540--Hb_002769_030 Hb_000300_470 Hb_000300_470 Hb_000046_540--Hb_000300_470 Hb_002660_190 Hb_002660_190 Hb_004108_060--Hb_002660_190 Hb_001472_160 Hb_001472_160 Hb_004108_060--Hb_001472_160 Hb_002282_070 Hb_002282_070 Hb_004108_060--Hb_002282_070 Hb_004108_060--Hb_000529_180 Hb_001377_040 Hb_001377_040 Hb_004108_060--Hb_001377_040 Hb_001427_040 Hb_001427_040 Hb_004108_060--Hb_001427_040 Hb_007472_090 Hb_007472_090 Hb_002639_110--Hb_007472_090 Hb_002908_040 Hb_002908_040 Hb_002639_110--Hb_002908_040 Hb_011485_060 Hb_011485_060 Hb_002639_110--Hb_011485_060 Hb_001223_010 Hb_001223_010 Hb_002639_110--Hb_001223_010 Hb_000365_240 Hb_000365_240 Hb_002639_110--Hb_000365_240 Hb_002609_080 Hb_002609_080 Hb_002639_110--Hb_002609_080 Hb_000482_040 Hb_000482_040 Hb_002078_340--Hb_000482_040 Hb_012150_030 Hb_012150_030 Hb_002078_340--Hb_012150_030 Hb_003153_010 Hb_003153_010 Hb_002078_340--Hb_003153_010 Hb_003376_230 Hb_003376_230 Hb_002078_340--Hb_003376_230 Hb_000364_050 Hb_000364_050 Hb_002078_340--Hb_000364_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.88716 2.9781 3.929 2.76944 3.81831 1.4153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49384 1.96075 3.35131 4.34364 9.43752

CAGE analysis