Hb_155874_020

Information

Type -
Description -
Location Contig155874: 2788-4021
Sequence    

Annotation

kegg
ID eus:EUTSA_v10014451mg
description hypothetical protein
nr
ID 2G4L
description Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
swissprot
ID P52704
description (S)-hydroxynitrile lyase OS=Hevea brasiliensis GN=HNL PE=1 SV=1
trembl
ID O49897
description Alpha-hydroxynitrile lyase OS=Manihot esculenta GN=HNL4 PE=4 SV=1
Gene Ontology
ID GO:0016829
description #NAME?

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13523: 2646-4013
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155874_020 0.0 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
2 Hb_132840_060 0.0279112355 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
3 Hb_000853_340 0.034754256 - - PREDICTED: kynurenine--oxoglutarate transaminase 1-like isoform X2 [Populus euphratica]
4 Hb_003702_010 0.038889758 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
5 Hb_000023_170 0.0392201729 - - PREDICTED: protein ASPARTIC PROTEASE IN GUARD CELL 2-like [Jatropha curcas]
6 Hb_008195_100 0.0415915712 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 4 [Vitis vinifera]
7 Hb_008032_010 0.0436298149 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
8 Hb_009189_090 0.0458874705 - - protein phosphatase-2c, putative [Ricinus communis]
9 Hb_003729_050 0.052587133 - - PREDICTED: vacuolar iron transporter 1-like isoform X1 [Jatropha curcas]
10 Hb_006355_100 0.0603109879 - - hypothetical protein glysoja_002455 [Glycine soja]
11 Hb_000173_330 0.0629616783 - - PREDICTED: glutamine synthetase leaf isozyme, chloroplastic [Vitis vinifera]
12 Hb_019762_030 0.0646419391 - - hypothetical protein POPTR_0002s08720g [Populus trichocarpa]
13 Hb_017358_060 0.066281645 - - PREDICTED: uncharacterized protein LOC105641510 [Jatropha curcas]
14 Hb_005357_210 0.0800677369 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein MERISTEM L1 [Jatropha curcas]
15 Hb_005375_100 0.0806170996 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH57-like [Jatropha curcas]
16 Hb_063584_010 0.0839209718 - - hypothetical protein JCGZ_10530 [Jatropha curcas]
17 Hb_006649_100 0.0937502255 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
18 Hb_001329_060 0.0961717851 - - Polygalacturonase precursor, putative [Ricinus communis]
19 Hb_002701_100 0.0976623136 transcription factor TF Family: MIKC PREDICTED: truncated transcription factor CAULIFLOWER A-like [Jatropha curcas]
20 Hb_025048_050 0.0984863299 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_155874_020 Hb_155874_020 Hb_132840_060 Hb_132840_060 Hb_155874_020--Hb_132840_060 Hb_000853_340 Hb_000853_340 Hb_155874_020--Hb_000853_340 Hb_003702_010 Hb_003702_010 Hb_155874_020--Hb_003702_010 Hb_000023_170 Hb_000023_170 Hb_155874_020--Hb_000023_170 Hb_008195_100 Hb_008195_100 Hb_155874_020--Hb_008195_100 Hb_008032_010 Hb_008032_010 Hb_155874_020--Hb_008032_010 Hb_132840_060--Hb_008032_010 Hb_003729_050 Hb_003729_050 Hb_132840_060--Hb_003729_050 Hb_009189_090 Hb_009189_090 Hb_132840_060--Hb_009189_090 Hb_132840_060--Hb_000023_170 Hb_006355_100 Hb_006355_100 Hb_132840_060--Hb_006355_100 Hb_019762_030 Hb_019762_030 Hb_000853_340--Hb_019762_030 Hb_000853_340--Hb_003702_010 Hb_000853_340--Hb_008195_100 Hb_000853_340--Hb_000023_170 Hb_000853_340--Hb_132840_060 Hb_003702_010--Hb_000023_170 Hb_003702_010--Hb_009189_090 Hb_003702_010--Hb_132840_060 Hb_005357_210 Hb_005357_210 Hb_003702_010--Hb_005357_210 Hb_000023_170--Hb_009189_090 Hb_000023_170--Hb_008032_010 Hb_000023_170--Hb_005357_210 Hb_008195_100--Hb_003702_010 Hb_008195_100--Hb_000023_170 Hb_008195_100--Hb_132840_060 Hb_008195_100--Hb_009189_090 Hb_008032_010--Hb_006355_100 Hb_008032_010--Hb_003729_050 Hb_008032_010--Hb_009189_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.29871 0.13056 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.538374

CAGE analysis