Hb_155880_010

Information

Type -
Description -
Location Contig155880: 1120-1863
Sequence    

Annotation

kegg
ID pmum:103322611
description uncharacterized protein DDB_G0271670-like
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID C7J7N6
description Os10g0357350 protein OS=Oryza sativa subsp. japonica GN=Os10g0357350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155880_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_000504_250 0.0050897405 - - -
3 Hb_085922_010 0.0684701352 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_003206_040 0.2414344031 - - Auxin efflux carrier component, putative [Ricinus communis]
5 Hb_141990_060 0.242305463 - - -
6 Hb_004409_010 0.2446107135 - - -
7 Hb_021470_010 0.2485690525 - - polyprotein [Citrus endogenous pararetrovirus]
8 Hb_030449_010 0.2547348138 - - -
9 Hb_180003_010 0.2557831191 - - PREDICTED: uncharacterized protein LOC105647154 [Jatropha curcas]
10 Hb_011113_020 0.2596821929 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
11 Hb_096257_010 0.2647281405 - - -
12 Hb_000894_050 0.2654524292 - - -
13 Hb_000011_030 0.3138355178 - - hypothetical protein POPTR_0003s18920g [Populus trichocarpa]
14 Hb_000015_110 0.3138355178 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
15 Hb_000029_040 0.3138355178 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000030_110 0.3138355178 - - -
17 Hb_000034_130 0.3138355178 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000046_470 0.3138355178 - - glutaredoxin, grx, putative [Ricinus communis]
19 Hb_000058_010 0.3138355178 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000060_140 0.3138355178 - - -

Gene co-expression network

sample Hb_155880_010 Hb_155880_010 Hb_000504_250 Hb_000504_250 Hb_155880_010--Hb_000504_250 Hb_085922_010 Hb_085922_010 Hb_155880_010--Hb_085922_010 Hb_003206_040 Hb_003206_040 Hb_155880_010--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_155880_010--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_155880_010--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_155880_010--Hb_021470_010 Hb_000504_250--Hb_085922_010 Hb_000504_250--Hb_003206_040 Hb_000504_250--Hb_141990_060 Hb_000504_250--Hb_004409_010 Hb_000504_250--Hb_021470_010 Hb_085922_010--Hb_003206_040 Hb_085922_010--Hb_141990_060 Hb_085922_010--Hb_004409_010 Hb_085922_010--Hb_021470_010 Hb_003206_040--Hb_141990_060 Hb_003206_040--Hb_004409_010 Hb_003206_040--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_003206_040--Hb_030449_010 Hb_180003_010 Hb_180003_010 Hb_003206_040--Hb_180003_010 Hb_096257_010 Hb_096257_010 Hb_003206_040--Hb_096257_010 Hb_141990_060--Hb_004409_010 Hb_141990_060--Hb_021470_010 Hb_141990_060--Hb_030449_010 Hb_141990_060--Hb_180003_010 Hb_141990_060--Hb_096257_010 Hb_004409_010--Hb_021470_010 Hb_004409_010--Hb_030449_010 Hb_004409_010--Hb_180003_010 Hb_004409_010--Hb_096257_010 Hb_021470_010--Hb_030449_010 Hb_021470_010--Hb_180003_010 Hb_021470_010--Hb_096257_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.173122 0.0389279 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis