Hb_156279_020

Information

Type -
Description -
Location Contig156279: 71464-88935
Sequence    

Annotation

kegg
ID rcu:RCOM_1242470
description ATP-dependent clp protease ATP-binding subunit clpx, putative
nr
ID XP_002516670.1
description ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
swissprot
ID Q92QQ2
description ATP-dependent Clp protease ATP-binding subunit ClpX OS=Rhizobium meliloti (strain 1021) GN=clpX PE=3 SV=1
trembl
ID B9RSF1
description ATP-dependent clp protease ATP-binding subunit clpx, putative OS=Ricinus communis GN=RCOM_1242470 PE=4 SV=1
Gene Ontology
ID GO:0005739
description atp-dependent clp protease atp-binding subunit clpx- mitochondrial isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13569: 66099-70767 , PASA_asmbl_13571: 71902-72210 , PASA_asmbl_13573: 73272-73496 , PASA_asmbl_13575: 73090-77215 , PASA_asmbl_13576: 73092-77215 , PASA_asmbl_13577: 87540-88892
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156279_020 0.0 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
2 Hb_000331_260 0.0395974785 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
3 Hb_005269_070 0.0455980353 - - PREDICTED: translation factor GUF1 homolog, organellar chromatophore [Jatropha curcas]
4 Hb_002078_350 0.052938592 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
5 Hb_000331_550 0.0559584858 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 67 [Jatropha curcas]
6 Hb_000684_470 0.0564161574 transcription factor TF Family: Orphans PREDICTED: two-component response regulator-like APRR7 [Jatropha curcas]
7 Hb_000035_180 0.057283247 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
8 Hb_011386_010 0.0575582256 - - mitochondrial carrier protein, putative [Ricinus communis]
9 Hb_007479_040 0.0608548446 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000215_110 0.0610079115 - - PREDICTED: uncharacterized protein C3F10.06c isoform X1 [Jatropha curcas]
11 Hb_002169_040 0.0627495792 - - unknown [Populus trichocarpa]
12 Hb_005054_110 0.0629385032 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
13 Hb_004254_090 0.063354023 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_009486_140 0.0643298935 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
15 Hb_001902_030 0.0643662284 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
16 Hb_000373_070 0.0643936361 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
17 Hb_000985_030 0.0648591345 - - PREDICTED: RRP15-like protein [Populus euphratica]
18 Hb_001163_050 0.0652139454 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
19 Hb_008847_030 0.0653520854 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
20 Hb_002518_260 0.0661724201 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]

Gene co-expression network

sample Hb_156279_020 Hb_156279_020 Hb_000331_260 Hb_000331_260 Hb_156279_020--Hb_000331_260 Hb_005269_070 Hb_005269_070 Hb_156279_020--Hb_005269_070 Hb_002078_350 Hb_002078_350 Hb_156279_020--Hb_002078_350 Hb_000331_550 Hb_000331_550 Hb_156279_020--Hb_000331_550 Hb_000684_470 Hb_000684_470 Hb_156279_020--Hb_000684_470 Hb_000035_180 Hb_000035_180 Hb_156279_020--Hb_000035_180 Hb_004143_060 Hb_004143_060 Hb_000331_260--Hb_004143_060 Hb_000331_260--Hb_005269_070 Hb_000215_110 Hb_000215_110 Hb_000331_260--Hb_000215_110 Hb_001902_030 Hb_001902_030 Hb_000331_260--Hb_001902_030 Hb_011037_030 Hb_011037_030 Hb_000331_260--Hb_011037_030 Hb_002169_040 Hb_002169_040 Hb_005269_070--Hb_002169_040 Hb_000329_320 Hb_000329_320 Hb_005269_070--Hb_000329_320 Hb_000985_030 Hb_000985_030 Hb_005269_070--Hb_000985_030 Hb_006634_070 Hb_006634_070 Hb_005269_070--Hb_006634_070 Hb_011386_010 Hb_011386_010 Hb_002078_350--Hb_011386_010 Hb_000373_070 Hb_000373_070 Hb_002078_350--Hb_000373_070 Hb_006831_140 Hb_006831_140 Hb_002078_350--Hb_006831_140 Hb_001470_030 Hb_001470_030 Hb_002078_350--Hb_001470_030 Hb_002078_350--Hb_000035_180 Hb_001163_050 Hb_001163_050 Hb_000331_550--Hb_001163_050 Hb_000331_550--Hb_000373_070 Hb_011995_010 Hb_011995_010 Hb_000331_550--Hb_011995_010 Hb_015934_040 Hb_015934_040 Hb_000331_550--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000331_550--Hb_002754_010 Hb_005116_160 Hb_005116_160 Hb_000684_470--Hb_005116_160 Hb_005779_060 Hb_005779_060 Hb_000684_470--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000684_470--Hb_002046_180 Hb_005463_100 Hb_005463_100 Hb_000684_470--Hb_005463_100 Hb_009767_110 Hb_009767_110 Hb_000684_470--Hb_009767_110 Hb_000146_070 Hb_000146_070 Hb_000035_180--Hb_000146_070 Hb_007479_040 Hb_007479_040 Hb_000035_180--Hb_007479_040 Hb_000340_180 Hb_000340_180 Hb_000035_180--Hb_000340_180 Hb_000035_180--Hb_000331_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63001 5.23558 6.20129 6.13407 6.75665 7.37826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.65146 9.48154 8.51107 7.35624 7.57978

CAGE analysis