Hb_156473_010

Information

Type -
Description -
Location Contig156473: 613-1439
Sequence    

Annotation

kegg
ID pmum:103342396
description putative ribonuclease H protein At1g65750
nr
ID XP_008244240.1
description PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XIH1
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015647mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description ribonuclease h protein at1g65750

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156473_010 0.0 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
2 Hb_042223_010 0.1110086831 - - Protein Z, putative [Ricinus communis]
3 Hb_100873_030 0.1687875253 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
4 Hb_001391_140 0.2046396354 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
5 Hb_000042_240 0.2193981445 - - -
6 Hb_000784_040 0.219577233 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
7 Hb_001587_210 0.2205346777 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
8 Hb_018954_010 0.2212448775 - - -
9 Hb_000141_240 0.225805145 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
10 Hb_003786_090 0.2372420745 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
11 Hb_000227_200 0.2374276982 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
12 Hb_000995_070 0.2432318654 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
13 Hb_008790_050 0.2476664058 - - conserved hypothetical protein [Ricinus communis]
14 Hb_088538_020 0.2684081005 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
15 Hb_000172_570 0.2692678688 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
16 Hb_039229_010 0.2706066035 - - -
17 Hb_001114_340 0.2719326636 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
18 Hb_168925_010 0.273229809 - - -
19 Hb_001741_040 0.2766520021 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
20 Hb_000856_370 0.2774591691 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]

Gene co-expression network

sample Hb_156473_010 Hb_156473_010 Hb_042223_010 Hb_042223_010 Hb_156473_010--Hb_042223_010 Hb_100873_030 Hb_100873_030 Hb_156473_010--Hb_100873_030 Hb_001391_140 Hb_001391_140 Hb_156473_010--Hb_001391_140 Hb_000042_240 Hb_000042_240 Hb_156473_010--Hb_000042_240 Hb_000784_040 Hb_000784_040 Hb_156473_010--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_156473_010--Hb_001587_210 Hb_042223_010--Hb_100873_030 Hb_042223_010--Hb_000042_240 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_042223_010--Hb_001587_210 Hb_042223_010--Hb_000784_040 Hb_000995_070 Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_000141_240 Hb_000141_240 Hb_100873_030--Hb_000141_240 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_001391_140--Hb_000784_040 Hb_001391_140--Hb_042223_010 Hb_003599_070 Hb_003599_070 Hb_001391_140--Hb_003599_070 Hb_091433_040 Hb_091433_040 Hb_001391_140--Hb_091433_040 Hb_001391_140--Hb_000227_200 Hb_005568_010 Hb_005568_010 Hb_000042_240--Hb_005568_010 Hb_052941_010 Hb_052941_010 Hb_000042_240--Hb_052941_010 Hb_001902_120 Hb_001902_120 Hb_000042_240--Hb_001902_120 Hb_010174_070 Hb_010174_070 Hb_000042_240--Hb_010174_070 Hb_001741_040 Hb_001741_040 Hb_000042_240--Hb_001741_040 Hb_000784_040--Hb_000227_200 Hb_000784_040--Hb_091433_040 Hb_000784_040--Hb_000995_070 Hb_005914_070 Hb_005914_070 Hb_000784_040--Hb_005914_070 Hb_000784_040--Hb_003599_070 Hb_001587_210--Hb_000227_200 Hb_001587_210--Hb_000784_040 Hb_003786_090 Hb_003786_090 Hb_001587_210--Hb_003786_090 Hb_001587_210--Hb_091433_040 Hb_000450_020 Hb_000450_020 Hb_001587_210--Hb_000450_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0856706 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.203177 0.319185 1.5277 0 0

CAGE analysis