Hb_156503_040

Information

Type -
Description -
Location Contig156503: 4242-10454
Sequence    

Annotation

kegg
ID egr:104442758
description uncharacterized LOC104442758
nr
ID XP_012092396.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
swissprot
ID Q9ZT07
description G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 OS=Arabidopsis thaliana GN=RKS1 PE=3 SV=3
trembl
ID B9RXX5
description Negative regulator of the PHO system, putative OS=Ricinus communis GN=RCOM_0906850 PE=4 SV=1
Gene Ontology
ID GO:0016772
description g-type lectin s-receptor-like serine threonine-protein kinase at1g11410

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156503_040 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
2 Hb_123763_010 0.1918576313 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
3 Hb_001017_080 0.2069636489 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
4 Hb_000025_440 0.2243927079 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
5 Hb_182005_010 0.2299233568 - - PREDICTED: uncharacterized protein LOC105639166 [Jatropha curcas]
6 Hb_109578_010 0.2368355637 - - conserved hypothetical protein [Ricinus communis]
7 Hb_069022_010 0.2402584871 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005714_050 0.2412905629 transcription factor TF Family: B3 hypothetical protein POPTR_1461s00200g [Populus trichocarpa]
9 Hb_000500_210 0.2450356188 - - -
10 Hb_000975_270 0.2499264347 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
11 Hb_004128_040 0.2560644413 - - -
12 Hb_032974_010 0.2668738435 - - -
13 Hb_001488_400 0.269429501 - - hypothetical protein POPTR_0018s12030g [Populus trichocarpa]
14 Hb_021924_010 0.2709870493 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
15 Hb_005725_100 0.2783265393 - - hypothetical protein 30 [Hevea brasiliensis]
16 Hb_004048_010 0.2799428095 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
17 Hb_005199_010 0.2830862415 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000272_050 0.2844905987 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
19 Hb_155092_010 0.2898585233 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
20 Hb_000398_030 0.291387834 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_156503_040 Hb_156503_040 Hb_123763_010 Hb_123763_010 Hb_156503_040--Hb_123763_010 Hb_001017_080 Hb_001017_080 Hb_156503_040--Hb_001017_080 Hb_000025_440 Hb_000025_440 Hb_156503_040--Hb_000025_440 Hb_182005_010 Hb_182005_010 Hb_156503_040--Hb_182005_010 Hb_109578_010 Hb_109578_010 Hb_156503_040--Hb_109578_010 Hb_069022_010 Hb_069022_010 Hb_156503_040--Hb_069022_010 Hb_005714_050 Hb_005714_050 Hb_123763_010--Hb_005714_050 Hb_002228_090 Hb_002228_090 Hb_123763_010--Hb_002228_090 Hb_123763_010--Hb_069022_010 Hb_000398_030 Hb_000398_030 Hb_123763_010--Hb_000398_030 Hb_000975_270 Hb_000975_270 Hb_123763_010--Hb_000975_270 Hb_001017_080--Hb_000025_440 Hb_001017_080--Hb_109578_010 Hb_000500_210 Hb_000500_210 Hb_001017_080--Hb_000500_210 Hb_004931_010 Hb_004931_010 Hb_001017_080--Hb_004931_010 Hb_001017_080--Hb_000975_270 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000025_440--Hb_000500_210 Hb_021924_010 Hb_021924_010 Hb_182005_010--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_182005_010--Hb_001488_400 Hb_182005_010--Hb_000500_210 Hb_000975_180 Hb_000975_180 Hb_182005_010--Hb_000975_180 Hb_005245_070 Hb_005245_070 Hb_182005_010--Hb_005245_070 Hb_033376_010 Hb_033376_010 Hb_182005_010--Hb_033376_010 Hb_005199_010 Hb_005199_010 Hb_109578_010--Hb_005199_010 Hb_000275_010 Hb_000275_010 Hb_109578_010--Hb_000275_010 Hb_000179_150 Hb_000179_150 Hb_109578_010--Hb_000179_150 Hb_004048_010 Hb_004048_010 Hb_109578_010--Hb_004048_010 Hb_084889_010 Hb_084889_010 Hb_109578_010--Hb_084889_010 Hb_000445_190 Hb_000445_190 Hb_069022_010--Hb_000445_190 Hb_069022_010--Hb_005714_050 Hb_032974_010 Hb_032974_010 Hb_069022_010--Hb_032974_010 Hb_000099_230 Hb_000099_230 Hb_069022_010--Hb_000099_230 Hb_069022_010--Hb_000975_270 Hb_000111_230 Hb_000111_230 Hb_069022_010--Hb_000111_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0247237 0.00576697 0 0.0290908 0.0054608 0.00509582
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0529129 0.104098 0 0.00412681 0

CAGE analysis