Hb_156593_050

Information

Type -
Description -
Location Contig156593: 17539-18690
Sequence    

Annotation

kegg
ID rcu:RCOM_1066300
description hypothetical protein
nr
ID XP_012079407.1
description PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
swissprot
ID O81242
description DNA-binding protein RHL1 OS=Arabidopsis thaliana GN=RHL1 PE=1 SV=1
trembl
ID A0A067LF23
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156593_050 0.0 - - PREDICTED: DNA-binding protein RHL1 isoform X1 [Jatropha curcas]
2 Hb_010795_060 0.139555564 - - -
3 Hb_012753_020 0.20916386 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000661_160 0.2134453411 - - hexokinase [Manihot esculenta]
5 Hb_094022_010 0.2159664332 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]
6 Hb_036790_130 0.2159948512 - - -
7 Hb_007086_010 0.2190860485 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26-like [Jatropha curcas]
8 Hb_003688_200 0.2202347371 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000237_230 0.2235506845 - - PREDICTED: RNA polymerase I-specific transcription initiation factor RRN3 isoform X1 [Jatropha curcas]
10 Hb_000211_110 0.2255367026 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein isoform X1 [Jatropha curcas]
11 Hb_001758_020 0.2258900489 - - conserved hypothetical protein [Ricinus communis]
12 Hb_009838_130 0.2294179136 - - hypothetical protein CISIN_1g010403mg [Citrus sinensis]
13 Hb_027428_030 0.2304172174 - - unnamed protein product [Coffea canephora]
14 Hb_000343_230 0.232713461 - - PREDICTED: peptidyl-prolyl cis-trans isomerase PASTICCINO1 isoform X1 [Jatropha curcas]
15 Hb_002483_020 0.2335407293 - - -
16 Hb_007803_010 0.2339370846 - - PREDICTED: F-box protein At3g07870-like [Jatropha curcas]
17 Hb_007380_110 0.2343881296 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
18 Hb_003050_370 0.2354475539 - - mitochondrial inner membrane protease subunit, putative [Ricinus communis]
19 Hb_000261_110 0.2361474473 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
20 Hb_156144_010 0.2372385197 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9 [Jatropha curcas]

Gene co-expression network

sample Hb_156593_050 Hb_156593_050 Hb_010795_060 Hb_010795_060 Hb_156593_050--Hb_010795_060 Hb_012753_020 Hb_012753_020 Hb_156593_050--Hb_012753_020 Hb_000661_160 Hb_000661_160 Hb_156593_050--Hb_000661_160 Hb_094022_010 Hb_094022_010 Hb_156593_050--Hb_094022_010 Hb_036790_130 Hb_036790_130 Hb_156593_050--Hb_036790_130 Hb_007086_010 Hb_007086_010 Hb_156593_050--Hb_007086_010 Hb_010795_060--Hb_036790_130 Hb_010795_060--Hb_094022_010 Hb_010795_060--Hb_000661_160 Hb_000261_110 Hb_000261_110 Hb_010795_060--Hb_000261_110 Hb_000211_110 Hb_000211_110 Hb_010795_060--Hb_000211_110 Hb_000640_020 Hb_000640_020 Hb_012753_020--Hb_000640_020 Hb_002431_020 Hb_002431_020 Hb_012753_020--Hb_002431_020 Hb_001754_170 Hb_001754_170 Hb_012753_020--Hb_001754_170 Hb_003073_200 Hb_003073_200 Hb_012753_020--Hb_003073_200 Hb_012753_020--Hb_000211_110 Hb_001894_030 Hb_001894_030 Hb_012753_020--Hb_001894_030 Hb_000661_160--Hb_000211_110 Hb_000661_160--Hb_000261_110 Hb_009111_040 Hb_009111_040 Hb_000661_160--Hb_009111_040 Hb_000313_300 Hb_000313_300 Hb_000661_160--Hb_000313_300 Hb_000106_130 Hb_000106_130 Hb_000661_160--Hb_000106_130 Hb_004032_060 Hb_004032_060 Hb_000661_160--Hb_004032_060 Hb_000699_130 Hb_000699_130 Hb_094022_010--Hb_000699_130 Hb_003752_080 Hb_003752_080 Hb_094022_010--Hb_003752_080 Hb_000529_080 Hb_000529_080 Hb_094022_010--Hb_000529_080 Hb_000002_330 Hb_000002_330 Hb_094022_010--Hb_000002_330 Hb_000342_110 Hb_000342_110 Hb_094022_010--Hb_000342_110 Hb_007803_010 Hb_007803_010 Hb_094022_010--Hb_007803_010 Hb_000270_300 Hb_000270_300 Hb_036790_130--Hb_000270_300 Hb_000186_260 Hb_000186_260 Hb_036790_130--Hb_000186_260 Hb_000556_100 Hb_000556_100 Hb_036790_130--Hb_000556_100 Hb_005214_060 Hb_005214_060 Hb_036790_130--Hb_005214_060 Hb_005016_060 Hb_005016_060 Hb_036790_130--Hb_005016_060 Hb_002411_180 Hb_002411_180 Hb_036790_130--Hb_002411_180 Hb_030385_010 Hb_030385_010 Hb_007086_010--Hb_030385_010 Hb_156825_010 Hb_156825_010 Hb_007086_010--Hb_156825_010 Hb_001380_020 Hb_001380_020 Hb_007086_010--Hb_001380_020 Hb_001009_040 Hb_001009_040 Hb_007086_010--Hb_001009_040 Hb_005389_150 Hb_005389_150 Hb_007086_010--Hb_005389_150 Hb_000270_630 Hb_000270_630 Hb_007086_010--Hb_000270_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20449 0.223165 0.126138 0.161506 0.653017 0.423791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.436897 0.147239 0 0.23792 0

CAGE analysis