Hb_156635_030

Information

Type -
Description -
Location Contig156635: 13894-16730
Sequence    

Annotation

kegg
ID tcc:TCM_016000
description NADH dehydrogenase 1 beta subcomplex subunit 8
nr
ID XP_010264244.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
swissprot
ID Q9FGK0
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial OS=Arabidopsis thaliana GN=At5g47570 PE=2 SV=1
trembl
ID W9R278
description Uncharacterized protein OS=Morus notabilis GN=L484_019050 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13630: 13932-16684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156635_030 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Nelumbo nucifera]
2 Hb_002284_240 0.0804548916 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
3 Hb_001184_090 0.0808902945 - - PREDICTED: TIP41-like protein [Jatropha curcas]
4 Hb_000327_190 0.0821241557 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
5 Hb_000926_250 0.0823578812 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]
6 Hb_002107_130 0.0865069832 - - protein with unknown function [Ricinus communis]
7 Hb_000007_100 0.0866644032 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
8 Hb_128048_010 0.0872528621 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
9 Hb_000205_160 0.0890191497 - - Peroxisome biogenesis protein 12 [Morus notabilis]
10 Hb_000000_170 0.0890595209 - - defender against cell death, putative [Ricinus communis]
11 Hb_003599_040 0.0902645417 - - unnamed protein product [Vitis vinifera]
12 Hb_000926_300 0.0910682864 - - PREDICTED: small ubiquitin-related modifier 1 [Jatropha curcas]
13 Hb_004800_230 0.0951812473 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
14 Hb_000928_240 0.1000312522 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
15 Hb_002105_090 0.1007176732 - - Rab4 [Hevea brasiliensis]
16 Hb_001489_060 0.1009689737 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
17 Hb_000505_140 0.102555186 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
18 Hb_000174_090 0.1026635973 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
19 Hb_002081_130 0.105251033 - - serine carboxypeptidase, putative [Ricinus communis]
20 Hb_001269_320 0.1066552079 - - 40S ribosomal protein S12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_156635_030 Hb_156635_030 Hb_002284_240 Hb_002284_240 Hb_156635_030--Hb_002284_240 Hb_001184_090 Hb_001184_090 Hb_156635_030--Hb_001184_090 Hb_000327_190 Hb_000327_190 Hb_156635_030--Hb_000327_190 Hb_000926_250 Hb_000926_250 Hb_156635_030--Hb_000926_250 Hb_002107_130 Hb_002107_130 Hb_156635_030--Hb_002107_130 Hb_000007_100 Hb_000007_100 Hb_156635_030--Hb_000007_100 Hb_003599_040 Hb_003599_040 Hb_002284_240--Hb_003599_040 Hb_159809_020 Hb_159809_020 Hb_002284_240--Hb_159809_020 Hb_002284_240--Hb_000926_250 Hb_002284_240--Hb_000007_100 Hb_000020_060 Hb_000020_060 Hb_002284_240--Hb_000020_060 Hb_002284_240--Hb_000327_190 Hb_002105_090 Hb_002105_090 Hb_001184_090--Hb_002105_090 Hb_000494_020 Hb_000494_020 Hb_001184_090--Hb_000494_020 Hb_000000_170 Hb_000000_170 Hb_001184_090--Hb_000000_170 Hb_004800_230 Hb_004800_230 Hb_001184_090--Hb_004800_230 Hb_000832_140 Hb_000832_140 Hb_001184_090--Hb_000832_140 Hb_000454_050 Hb_000454_050 Hb_001184_090--Hb_000454_050 Hb_000327_190--Hb_003599_040 Hb_000327_190--Hb_000926_250 Hb_002477_070 Hb_002477_070 Hb_000327_190--Hb_002477_070 Hb_033834_040 Hb_033834_040 Hb_000327_190--Hb_033834_040 Hb_008900_010 Hb_008900_010 Hb_000327_190--Hb_008900_010 Hb_000926_250--Hb_000007_100 Hb_000926_250--Hb_033834_040 Hb_001604_080 Hb_001604_080 Hb_000926_250--Hb_001604_080 Hb_002226_070 Hb_002226_070 Hb_000926_250--Hb_002226_070 Hb_063716_050 Hb_063716_050 Hb_000926_250--Hb_063716_050 Hb_000928_240 Hb_000928_240 Hb_002107_130--Hb_000928_240 Hb_003878_190 Hb_003878_190 Hb_002107_130--Hb_003878_190 Hb_002107_130--Hb_001184_090 Hb_002006_020 Hb_002006_020 Hb_002107_130--Hb_002006_020 Hb_001477_110 Hb_001477_110 Hb_002107_130--Hb_001477_110 Hb_000926_300 Hb_000926_300 Hb_000007_100--Hb_000926_300 Hb_000380_190 Hb_000380_190 Hb_000007_100--Hb_000380_190 Hb_009793_010 Hb_009793_010 Hb_000007_100--Hb_009793_010 Hb_000007_100--Hb_003599_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.7553 13.4115 31.0362 25.6649 58.5253 64.1554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.1458 84.2476 36.3308 38.3259 10.0552

CAGE analysis