Hb_156637_010

Information

Type -
Description -
Location Contig156637: 184-1176
Sequence    

Annotation

kegg
ID crb:CARUB_v10003758mg
description hypothetical protein
nr
ID XP_010423981.1
description PREDICTED: aldose reductase-like [Camelina sativa]
swissprot
ID P23901
description Aldose reductase OS=Hordeum vulgare PE=1 SV=1
trembl
ID R0HGW1
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10003758mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description aldose reductase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156637_010 0.0 - - PREDICTED: aldose reductase-like [Camelina sativa]
2 Hb_011549_020 0.0011195986 - - -
3 Hb_000815_180 0.0076616761 - - -
4 Hb_086063_030 0.0090329666 - - PREDICTED: pre-mRNA-processing-splicing factor 8-like [Camelina sativa]
5 Hb_007966_010 0.0097496591 - - carbohydrate binding protein, putative [Ricinus communis]
6 Hb_001740_020 0.0130304723 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
7 Hb_000266_090 0.0149596195 - - -
8 Hb_004785_110 0.0209480054 - - -
9 Hb_000603_060 0.0209890426 - - putative gag protein [Coffea canephora]
10 Hb_000473_130 0.0209988905 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
11 Hb_095589_010 0.02112363 - - Ankyrin repeat family protein, putative [Theobroma cacao]
12 Hb_052135_040 0.0213916662 - - -
13 Hb_000963_100 0.0214533227 - - Protein SUA5, putative [Ricinus communis]
14 Hb_072376_010 0.0217332471 - - -
15 Hb_019429_010 0.0267681746 - - conserved hypothetical protein [Ricinus communis]
16 Hb_173479_010 0.0478078564 - - -
17 Hb_003687_260 0.0601003715 - - PREDICTED: inorganic phosphate transporter 1-4-like [Camelina sativa]
18 Hb_002539_060 0.0610658254 - - -
19 Hb_000083_030 0.0644258705 - - hypothetical protein JCGZ_24974 [Jatropha curcas]
20 Hb_049719_010 0.065104082 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_156637_010 Hb_156637_010 Hb_011549_020 Hb_011549_020 Hb_156637_010--Hb_011549_020 Hb_000815_180 Hb_000815_180 Hb_156637_010--Hb_000815_180 Hb_086063_030 Hb_086063_030 Hb_156637_010--Hb_086063_030 Hb_007966_010 Hb_007966_010 Hb_156637_010--Hb_007966_010 Hb_001740_020 Hb_001740_020 Hb_156637_010--Hb_001740_020 Hb_000266_090 Hb_000266_090 Hb_156637_010--Hb_000266_090 Hb_011549_020--Hb_086063_030 Hb_011549_020--Hb_007966_010 Hb_011549_020--Hb_000815_180 Hb_011549_020--Hb_001740_020 Hb_011549_020--Hb_000266_090 Hb_000815_180--Hb_086063_030 Hb_000815_180--Hb_007966_010 Hb_000815_180--Hb_001740_020 Hb_000815_180--Hb_000266_090 Hb_086063_030--Hb_007966_010 Hb_086063_030--Hb_001740_020 Hb_086063_030--Hb_000266_090 Hb_004785_110 Hb_004785_110 Hb_086063_030--Hb_004785_110 Hb_007966_010--Hb_001740_020 Hb_007966_010--Hb_000266_090 Hb_007966_010--Hb_004785_110 Hb_001740_020--Hb_000266_090 Hb_001740_020--Hb_004785_110 Hb_000603_060 Hb_000603_060 Hb_001740_020--Hb_000603_060 Hb_000473_130 Hb_000473_130 Hb_001740_020--Hb_000473_130 Hb_000266_090--Hb_004785_110 Hb_000266_090--Hb_000603_060 Hb_000266_090--Hb_000473_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.318948 0.316409 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis