Hb_156696_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig156696: 32-484
Sequence    

Annotation

kegg
ID tcc:TCM_025533
description LRR and NB-ARC domains-containing disease resistance protein, putative
nr
ID XP_012086251.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA42
description Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2
trembl
ID A0A061F6R0
description LRR and NB-ARC domains-containing disease resistance protein, putative OS=Theobroma cacao GN=TCM_025533 PE=4 SV=1
Gene Ontology
ID GO:0016787
description lrr and nb-arc domains-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156696_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_010162_010 0.1115022606 - - PREDICTED: probable disease resistance protein At4g27220 [Jatropha curcas]
3 Hb_001006_030 0.130675424 - - conserved hypothetical protein [Ricinus communis]
4 Hb_111147_010 0.1409350061 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002461_070 0.146812329 - - gibberellin 2-oxidase, putative [Ricinus communis]
6 Hb_001998_260 0.1549556226 - - cytochrome P450, putative [Ricinus communis]
7 Hb_028008_030 0.1559453628 - - probable xyloglucan endotransglucosylase/hydrolase protein 23 precursor [Malus domestica]
8 Hb_000676_170 0.1616905281 - - PREDICTED: bifunctional epoxide hydrolase 2 [Jatropha curcas]
9 Hb_039496_010 0.164604348 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
10 Hb_000230_160 0.1655502754 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
11 Hb_002374_060 0.1685129296 - - amino acid transporter, putative [Ricinus communis]
12 Hb_003805_080 0.1697929881 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]
13 Hb_001799_090 0.1698512949 - - PREDICTED: uclacyanin-2-like [Jatropha curcas]
14 Hb_000081_030 0.1699655785 - - BnaC09g05810D [Brassica napus]
15 Hb_005489_120 0.1739075245 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
16 Hb_006314_020 0.1746074872 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
17 Hb_008001_020 0.1753319229 transcription factor TF Family: GRAS PREDICTED: protein SHORT-ROOT-like [Populus euphratica]
18 Hb_003967_010 0.1771357777 - - cytochrome P450, putative [Ricinus communis]
19 Hb_000172_740 0.1775264498 - - HXXXD-type acyl-transferase family protein, putative [Theobroma cacao]
20 Hb_000286_030 0.1786087885 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]

Gene co-expression network

sample Hb_156696_010 Hb_156696_010 Hb_010162_010 Hb_010162_010 Hb_156696_010--Hb_010162_010 Hb_001006_030 Hb_001006_030 Hb_156696_010--Hb_001006_030 Hb_111147_010 Hb_111147_010 Hb_156696_010--Hb_111147_010 Hb_002461_070 Hb_002461_070 Hb_156696_010--Hb_002461_070 Hb_001998_260 Hb_001998_260 Hb_156696_010--Hb_001998_260 Hb_028008_030 Hb_028008_030 Hb_156696_010--Hb_028008_030 Hb_002374_060 Hb_002374_060 Hb_010162_010--Hb_002374_060 Hb_010162_010--Hb_002461_070 Hb_003371_040 Hb_003371_040 Hb_010162_010--Hb_003371_040 Hb_006314_020 Hb_006314_020 Hb_010162_010--Hb_006314_020 Hb_010162_010--Hb_001006_030 Hb_000069_520 Hb_000069_520 Hb_001006_030--Hb_000069_520 Hb_001006_030--Hb_002374_060 Hb_003967_010 Hb_003967_010 Hb_001006_030--Hb_003967_010 Hb_003266_060 Hb_003266_060 Hb_001006_030--Hb_003266_060 Hb_002289_110 Hb_002289_110 Hb_001006_030--Hb_002289_110 Hb_000676_170 Hb_000676_170 Hb_001006_030--Hb_000676_170 Hb_008705_040 Hb_008705_040 Hb_111147_010--Hb_008705_040 Hb_003734_120 Hb_003734_120 Hb_111147_010--Hb_003734_120 Hb_039496_010 Hb_039496_010 Hb_111147_010--Hb_039496_010 Hb_006618_080 Hb_006618_080 Hb_111147_010--Hb_006618_080 Hb_003805_080 Hb_003805_080 Hb_111147_010--Hb_003805_080 Hb_003787_060 Hb_003787_060 Hb_111147_010--Hb_003787_060 Hb_002461_070--Hb_001006_030 Hb_008001_020 Hb_008001_020 Hb_002461_070--Hb_008001_020 Hb_001821_030 Hb_001821_030 Hb_002461_070--Hb_001821_030 Hb_002461_070--Hb_002374_060 Hb_001799_090 Hb_001799_090 Hb_001998_260--Hb_001799_090 Hb_001998_260--Hb_028008_030 Hb_005144_100 Hb_005144_100 Hb_001998_260--Hb_005144_100 Hb_001998_260--Hb_003266_060 Hb_001998_260--Hb_002289_110 Hb_001998_260--Hb_039496_010 Hb_028008_030--Hb_003805_080 Hb_000230_160 Hb_000230_160 Hb_028008_030--Hb_000230_160 Hb_028008_030--Hb_001799_090 Hb_028008_030--Hb_039496_010 Hb_028008_030--Hb_003967_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.08839 1.97325 17.5943 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 2.01901 20.1167 1.48074

CAGE analysis