Hb_156850_020

Information

Type -
Description -
Location Contig156850: 6149-9601
Sequence    

Annotation

kegg
ID gmx:100807408
description ATP-dependent zinc metalloprotease FTSH, chloroplastic-like
nr
ID KHN33816.1
description ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
swissprot
ID Q5Z974
description ATP-dependent zinc metalloprotease FTSH 1, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH1 PE=2 SV=1
trembl
ID A0A0B2RGV1
description ATP-dependent zinc metalloprotease FTSH 1, chloroplastic OS=Glycine soja GN=glysoja_013822 PE=4 SV=1
Gene Ontology
ID GO:0004222
description atp-dependent zinc metalloprotease chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13642: 6345-9635
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_156850_020 0.0 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]
2 Hb_106552_030 0.0622294204 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
3 Hb_010080_070 0.0700566903 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
4 Hb_028960_010 0.0730146589 - - phosphoglycerate kinase, putative [Ricinus communis]
5 Hb_012940_020 0.0744382089 - - zeaxanthin epoxidase, putative [Ricinus communis]
6 Hb_011900_020 0.0752425037 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
7 Hb_000359_070 0.0812588299 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
8 Hb_000360_010 0.0918246704 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_068804_110 0.0930026321 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
10 Hb_003905_030 0.1010626505 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_000367_220 0.1040036744 - - hypothetical protein RCOM_1470580 [Ricinus communis]
12 Hb_007595_020 0.1047888355 - - maturase K [Hevea brasiliensis]
13 Hb_000992_090 0.1070789735 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
14 Hb_006816_040 0.1073827945 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
15 Hb_000107_540 0.1085572203 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
16 Hb_004979_050 0.1152287164 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
17 Hb_000679_320 0.118318143 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
18 Hb_001517_010 0.118458447 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003944_010 0.1186491402 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_000103_240 0.1198292932 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_156850_020 Hb_156850_020 Hb_106552_030 Hb_106552_030 Hb_156850_020--Hb_106552_030 Hb_010080_070 Hb_010080_070 Hb_156850_020--Hb_010080_070 Hb_028960_010 Hb_028960_010 Hb_156850_020--Hb_028960_010 Hb_012940_020 Hb_012940_020 Hb_156850_020--Hb_012940_020 Hb_011900_020 Hb_011900_020 Hb_156850_020--Hb_011900_020 Hb_000359_070 Hb_000359_070 Hb_156850_020--Hb_000359_070 Hb_106552_030--Hb_010080_070 Hb_000992_090 Hb_000992_090 Hb_106552_030--Hb_000992_090 Hb_106552_030--Hb_012940_020 Hb_068804_110 Hb_068804_110 Hb_106552_030--Hb_068804_110 Hb_000360_010 Hb_000360_010 Hb_106552_030--Hb_000360_010 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_010080_070--Hb_000992_090 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_028960_010--Hb_012940_020 Hb_028960_010--Hb_068804_110 Hb_001691_180 Hb_001691_180 Hb_028960_010--Hb_001691_180 Hb_028960_010--Hb_000359_070 Hb_028960_010--Hb_106552_030 Hb_012940_020--Hb_068804_110 Hb_003336_020 Hb_003336_020 Hb_012940_020--Hb_003336_020 Hb_012940_020--Hb_000359_070 Hb_011900_020--Hb_000359_070 Hb_011900_020--Hb_000360_010 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_000038_020 Hb_000038_020 Hb_000359_070--Hb_000038_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.41682 27.4658 121.638 75.8454 7.11278 8.44359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.77798 7.65875 6.03715 17.7915 644.119

CAGE analysis